Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14665 100 3e-16
seq6733 98.7 1e-15
SEQ14127 95.1 1e-14
>SEQ14665
Length=6019
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852
||||| || | ||||| |||| | || || |||||||||||| | |||||
Sbjct 2321 ACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 2380
Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912
||||| ||||| || || || ||||| ||||||||| | | || | || || |||
Sbjct 2381 AAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 2440
Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTAC 26965
||||||||||||| | | | | | |||||||| ||||| ||||||||||| ||
Sbjct 2441 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCAC 2493
Score = 96.9 bits (106), Expect = 3e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864
|||||| |||| | || || | ||| || ||||| | || || |||||| ||
Sbjct 2049 ATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGCAAGATTCAGGAT 2108
Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924
|| || || || || || || ||||| | | || | || ||||||||||| ||||||
Sbjct 2109 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 2168
Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
| | | | | |||||||||||||||||||| || |||||| ||||||| |||||
Sbjct 2169 GGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTACTCTCCATCTCGTCCT 2224
>seq6733
Length=2883
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
||||| | || || ||||| | || || ||| | |||||| |||| | |||||
Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
|| |||||||| | ||||| ||||| ||||| || || || || || |||||
Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
||| | || || | || |||||| ||||||||||||| | | | | |||||| |||
Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| ||||| ||| | || |||||||
Sbjct 1620 ATCCAAAAGGAATCCACTCTTCACTTGGTCCT 1589
>SEQ14127
Length=21342
Score = 95.1 bits (104), Expect = 1e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384
|||||| | ||| ||| || || |||||| || ||||| || ||||| |||||
Sbjct 14214 GCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAG 14155
Query 120385 TAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGACA 120444
| ||| | || || | ||| || ||||| || |||||||||| || |||||| ||||
Sbjct 14154 AGATGAAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACA 14095
Query 120445 TGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501
|||||||||||| || ||||| | | | | || || |||||| ||||||||
Sbjct 14094 AGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGA 14038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478571843057200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |