Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 100 3e-16 seq6733 98.7 1e-15 SEQ14127 95.1 1e-14 >SEQ14665 Length=6019 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 ||||| || | ||||| |||| | || || |||||||||||| | ||||| Sbjct 2321 ACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 2380 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 ||||| ||||| || || || ||||| ||||||||| | | || | || || ||| Sbjct 2381 AAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 2440 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTAC 26965 ||||||||||||| | | | | | |||||||| ||||| ||||||||||| || Sbjct 2441 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCAC 2493 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 26805 ATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 26864 |||||| |||| | || || | ||| || ||||| | || || |||||| || Sbjct 2049 ATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGCAAGATTCAGGAT 2108 Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || || || || || || || ||||| | | || | || ||||||||||| |||||| Sbjct 2109 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 2168 Query 26925 GATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | | | | | |||||||||||||||||||| || |||||| ||||||| ||||| Sbjct 2169 GGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTACTCTCCATCTCGTCCT 2224 >seq6733 Length=2883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | || || ||| | |||||| |||| | ||||| Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | || |||||| ||||||||||||| | | | | |||||| ||| Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| ||||| ||| | || ||||||| Sbjct 1620 ATCCAAAAGGAATCCACTCTTCACTTGGTCCT 1589 >SEQ14127 Length=21342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 120325 GCTCGATGATGTTAGTGTTCACGATGACGTCGGCGGCAGCGAAAAACGCGAGAACGTGCT 120384 |||||| | ||| ||| || || |||||| || ||||| || ||||| ||||| Sbjct 14214 GCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAG 14155 Query 120385 TAAGAAAAAATCGTTCTTTATCGTTCAGTTTTTTGTTCCAATCGTCAAAGTCCTTGGACA 120444 | ||| | || || | ||| || ||||| || |||||||||| || |||||| |||| Sbjct 14154 AGATGAAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACA 14095 Query 120445 TGTCGATCTCTTCGACTTTCCAGTGACAATCGACCGCTTTCTTGTACGATTGCCAGA 120501 |||||||||||| || ||||| | | | | || || |||||| |||||||| Sbjct 14094 AGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGA 14038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478571843057200