Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 289 7e-73
seq290 100 7e-16
seq10 91.5 4e-13
>SEQ14673
Length=3941
Score = 289 bits (320), Expect = 7e-73
Identities = 1155/1792 (64%), Gaps = 46/1792 (3%)
Strand=Plus/Minus
Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450
||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| |||
Sbjct 2575 TTCGGATTCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAA 2516
Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510
|| || || || ||| | ||||||||||| ||||||| || | ||| |||| |
Sbjct 2515 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGC 2456
Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568
|| ||||| || || || ||| | || | | || ||||| |||||| | || |||
Sbjct 2455 GCCATTGAGACCTACAACCTTAT--GTCCAACAAATACTTCACACACGCCTCCCCTACAC 2398
Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628
| | | ||||| || | | | ||| | || || ||||| || | | |||||||
Sbjct 2397 TTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGG 2338
Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688
| || || || ||||| | ||| || || |||| |||||| | || || || ||||
Sbjct 2337 AGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATG 2278
Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746
| || || |||||| | || |||| | ||||| || | || ||||| |||
Sbjct 2277 CTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCA--TACATCGCCGG 2220
Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806
|| || |||| || || | || |||||||| || || || |||| ||||| ||
Sbjct 2219 TACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAG 2160
Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866
||||||||||| |||||| ||||| || || ||||| | ||||| ||||||
Sbjct 2159 ATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTG 2100
Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926
|| || ||| |||| ||||| || || ||||| || ||| || || || ||| | ||
Sbjct 2099 GCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCG 2040
Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AG 363984
|| |||||||| |||||||| | ||| || | || | || |||||||| || | |
Sbjct 2039 CGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAA 1980
Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044
| | | | ||||| |||| | ||||| | |||||||| || | | |||||||
Sbjct 1979 GAACG--CGGATTGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATAT 1922
Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104
|| ||||| | || ||||| || || | ||||| ||| || | | ||| |||||
Sbjct 1921 GGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACC 1862
Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164
|| || || ||||| |||| |||| | || | || | ||||| |||| ||
Sbjct 1861 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCA 1802
Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224
| ||| | ||||| ||| | ||||| ||| ||||| || |||| || || |||
Sbjct 1801 TTCATGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTCGGCACCATT 1742
Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283
| |||| ||| | || || || ||| | |||||| | || || || || ||
Sbjct 1741 C-GCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTG 1683
Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGA 364337
|||||| | || || || || || || | |||| | || || || |||| ||
Sbjct 1682 CTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAGGGAACTTACGA 1623
Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTA 364393
||| | ||| | || || || ||| | | ||| || || | ||||| | |
Sbjct 1622 TTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGAAACTTGAACAAGATCA 1567
Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452
| |||| || || || || | || || ||| || | | ||| | |||||||| ||
Sbjct 1566 TTGACATCAACTACTACCCCGTCCCAGAGGCCAGAAAGAGC-AATTTCCGTCATCGACCT 1508
Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGA-TGGCATTTG 364510
|| | | | ||||| || || || || || | ||| || |||| || | ||||||
Sbjct 1507 ATCGCTGTCGGTGTTCAAGGTCTTGCCGATGCTTTCTTG--GCTCTTCGATTACCATTTG 1450
Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570
| || ||||| || || || | | ||||| ||||| || || || ||
Sbjct 1449 AATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCTT 1390
Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630
|||| | || ||| | || || ||| | || ||||| || || || |
Sbjct 1389 TGACATCGTCCGTTGAGATTGCTAAGGAGTTGGGTACCTATGAGACTTACGAAGGCTCAC 1330
Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690
|| | ||| |||| || | || | ||| | ||| || || || | | || |||
Sbjct 1329 CTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTTACACCTACCGACCTTTGGG 1270
Query 364691 ACTGGGATACGCT---ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744
||||||||| ||| | ||| | || | || ||| |||||| | ||||
Sbjct 1269 ACTGGGATA-GCTTGAAGAAATCAA--TCAAACAACACGGTGTCCGCAACAGTTTGCTCG 1213
Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804
|| || || ||||| || || || | || || ||||| |||||||||||| |
Sbjct 1212 TT---GCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTG 1156
Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864
|||| | || || | || || || || || | | |||||||| | || ||||
Sbjct 1155 AACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTA 1096
Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924
| | || ||||||||||| |||| || | ||| |||| ||||||||||
Sbjct 1095 ACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACC 1036
Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984
||||||||| | ||||||| | || |||||||| |||||| || | |||
Sbjct 1035 GTATCATCGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 976
Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044
| ||||||| ||||| ||||| ||||| ||||| | || | ||||| || || |
Sbjct 975 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAATTGTTCAAATGGCCGCTGACC 916
Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCG 365104
| ||||| ||| | ||| || || | ||| | ||||| | || || |
Sbjct 915 GTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCCCACAATGG 856
Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
|||| |||| |||||||||||| || ||||||| ||||| ||||| ||
Sbjct 855 GCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGACCGG 804
>seq290
Length=24089
Score = 100 bits (110), Expect = 7e-16
Identities = 101/128 (79%), Gaps = 4/128 (3%)
Strand=Plus/Plus
Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTC-G 111477
|||||||| |||||||| |||||||| || || ||||||||| ||| | |||| | |
Sbjct 11483 GTAAAAATCTGGGATGGCAATGGATCGCGCGAGTTTCTAGATAGCAGAGG--CTTGACAG 11540
Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537
|| |||| |||||||| || ||||| || || ||||||||||| |||||||| || |
Sbjct 11541 ACCGTGAAGTTGGTGATCTTGGGCCAGTCTATGGCTTTCAATGGCGACACTTTGGGGCCG 11600
Query 111538 ACTACAAA 111545
| ||||||
Sbjct 11601 AATACAAA 11608
>seq10
Length=14555
Score = 91.5 bits (100), Expect = 4e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 65840 CATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACA 65899
||||| ||||||||||| || ||| ||| || | ||| |||||||| || ||
Sbjct 8582 CATACACAAACTGCACGATGTCGCCAAGTGAGTTTCGGACCGTACCGTCATATTTCGCCA 8523
Query 65900 TATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTA 65959
| ||||||| ||||| ||||||| ||| || ||||||||| | | ||| || || |
Sbjct 8522 TGACATCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGA 8463
Query 65960 CCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTCAGTCGG 66017
| || ||||| | | ||||||||| || | ||| || ||||| || ||||| ||
Sbjct 8462 CTGCAGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGG 8405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303100857335570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |