Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 289 7e-73 seq290 100 7e-16 seq10 91.5 4e-13 >SEQ14673 Length=3941 Score = 289 bits (320), Expect = 7e-73 Identities = 1155/1792 (64%), Gaps = 46/1792 (3%) Strand=Plus/Minus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 ||||||| ||||| | ||| ||| ||||| ||| || |||| | ||| ||| Sbjct 2575 TTCGGATTCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAA 2516 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || || || ||| | ||||||||||| ||||||| || | ||| |||| | Sbjct 2515 CGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGC 2456 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAA 363568 || ||||| || || || ||| | || | | || ||||| |||||| | || ||| Sbjct 2455 GCCATTGAGACCTACAACCTTAT--GTCCAACAAATACTTCACACACGCCTCCCCTACAC 2398 Query 363569 TGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGG 363628 | | | ||||| || | | | ||| | || || ||||| || | | ||||||| Sbjct 2397 TTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGG 2338 Query 363629 ACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATG 363688 | || || || ||||| | ||| || || |||| |||||| | || || || |||| Sbjct 2337 AGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATG 2278 Query 363689 CAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAA-CAGTTACATTCGCGG 363746 | || || |||||| | || |||| | ||||| || | || ||||| ||| Sbjct 2277 CTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCA--TACATCGCCGG 2220 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 || || |||| || || | || |||||||| || || || |||| ||||| || Sbjct 2219 TACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAG 2160 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 ||||||||||| |||||| ||||| || || ||||| | ||||| |||||| Sbjct 2159 ATACGTCGACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTG 2100 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || || ||| |||| ||||| || || ||||| || ||| || || || ||| | || Sbjct 2099 GCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCG 2040 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG--AG 363984 || |||||||| |||||||| | ||| || | || | || |||||||| || | | Sbjct 2039 CGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAA 1980 Query 363985 GCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGG 364044 | | | | ||||| |||| | ||||| | |||||||| || | | ||||||| Sbjct 1979 GAACG--CGGATTGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATAT 1922 Query 364045 GGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACA 364104 || ||||| | || ||||| || || | ||||| ||| || | | ||| ||||| Sbjct 1921 GGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACC 1862 Query 364105 ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCC 364164 || || || ||||| |||| |||| | || | || | ||||| |||| || Sbjct 1861 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCA 1802 Query 364165 TATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATT 364224 | ||| | ||||| ||| | ||||| ||| ||||| || |||| || || ||| Sbjct 1801 TTCATGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTCGGCACCATT 1742 Query 364225 CAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | |||| ||| | || || || ||| | |||||| | || || || || || Sbjct 1741 C-GCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTG 1683 Query 364284 ATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTG------TAAAAGATGGTACTTTTGA 364337 |||||| | || || || || || || | |||| | || || || |||| || Sbjct 1682 CTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAGGGAACTTACGA 1623 Query 364338 CCACCAGCATCTTTATGACGTAACCTATCATGCTACTTG---CAATCTCG-ACAAGGTTA 364393 ||| | ||| | || || || ||| | | ||| || || | ||||| | | Sbjct 1622 TTTCCAAAAGCTTCACGAGGTTAC---TCAAG-TCGTTGTCAGAAACTTGAACAAGATCA 1567 Query 364394 TCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCATCGCCCG 364452 | |||| || || || || | || || ||| || | | ||| | |||||||| || Sbjct 1566 TTGACATCAACTACTACCCCGTCCCAGAGGCCAGAAAGAGC-AATTTCCGTCATCGACCT 1508 Query 364453 ATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTC-AAGA-TGGCATTTG 364510 || | | | ||||| || || || || || | ||| || |||| || | |||||| Sbjct 1507 ATCGCTGTCGGTGTTCAAGGTCTTGCCGATGCTTTCTTG--GCTCTTCGATTACCATTTG 1450 Query 364511 ATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAA 364570 | || ||||| || || || | | ||||| ||||| || || || || Sbjct 1449 AATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCTT 1390 Query 364571 TGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCC 364630 |||| | || ||| | || || ||| | || ||||| || || || | Sbjct 1389 TGACATCGTCCGTTGAGATTGCTAAGGAGTTGGGTACCTATGAGACTTACGAAGGCTCAC 1330 Query 364631 CTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGA 364690 || | ||| |||| || | || | ||| | ||| || || || | | || ||| Sbjct 1329 CTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTTACACCTACCGACCTTTGGG 1270 Query 364691 ACTGGGATACGCT---ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCCTCG 364744 ||||||||| ||| | ||| | || | || ||| |||||| | |||| Sbjct 1269 ACTGGGATA-GCTTGAAGAAATCAA--TCAAACAACACGGTGTCCGCAACAGTTTGCTCG 1213 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 || || || ||||| || || || | || || ||||| |||||||||||| | Sbjct 1212 TT---GCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTG 1156 Query 364805 AACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTA 364864 |||| | || || | || || || || || | | |||||||| | || |||| Sbjct 1155 AACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTA 1096 Query 364865 ATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACT 364924 | | || ||||||||||| |||| || | ||| |||| |||||||||| Sbjct 1095 ACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACC 1036 Query 364925 ATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGC 364984 ||||||||| | ||||||| | || |||||||| |||||| || | ||| Sbjct 1035 GTATCATCGCTGACGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 976 Query 364985 CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATC 365044 | ||||||| ||||| ||||| ||||| ||||| | || | ||||| || || | Sbjct 975 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAATTGTTCAAATGGCCGCTGACC 916 Query 365045 GCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCG 365104 | ||||| ||| | ||| || || | ||| | ||||| | || || | Sbjct 915 GTGGTGCCTTTGTTGACCAGTCACAATCAATGAACATTCACATGAAAGACCCCACAATGG 856 Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 |||| |||| |||||||||||| || ||||||| ||||| ||||| || Sbjct 855 GCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGACCGG 804 >seq290 Length=24089 Score = 100 bits (110), Expect = 7e-16 Identities = 101/128 (79%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 111420 GTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATT-CAGTTGGTCTTGTC-G 111477 |||||||| |||||||| |||||||| || || ||||||||| ||| | |||| | | Sbjct 11483 GTAAAAATCTGGGATGGCAATGGATCGCGCGAGTTTCTAGATAGCAGAGG--CTTGACAG 11540 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 || |||| |||||||| || ||||| || || ||||||||||| |||||||| || | Sbjct 11541 ACCGTGAAGTTGGTGATCTTGGGCCAGTCTATGGCTTTCAATGGCGACACTTTGGGGCCG 11600 Query 111538 ACTACAAA 111545 | |||||| Sbjct 11601 AATACAAA 11608 >seq10 Length=14555 Score = 91.5 bits (100), Expect = 4e-13 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 65840 CATACTTAAACTGCACGACCATTCCTTGTGCGTTACGAATCGTTCCGTCATAATTGCACA 65899 ||||| ||||||||||| || ||| ||| || | ||| |||||||| || || Sbjct 8582 CATACACAAACTGCACGATGTCGCCAAGTGAGTTTCGGACCGTACCGTCATATTTCGCCA 8523 Query 65900 TATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAACCACTGTTTGCAGTTTTTA 65959 | ||||||| ||||| ||||||| ||| || ||||||||| | | ||| || || | Sbjct 8522 TGACATCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGA 8463 Query 65960 CCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAAAAGAAAAACTCAGTCGG 66017 | || ||||| | | ||||||||| || | ||| || ||||| || ||||| || Sbjct 8462 CTGCAGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGG 8405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303100857335570