Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 255 7e-63
SEQ14127 104 3e-17
>SEQ14673
Length=3941
Score = 255 bits (282), Expect = 7e-63
Identities = 1139/1776 (64%), Gaps = 35/1776 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | |||| || |||||||| || | ||| | || ||| ||
Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
|| || ||||| ||||| || || | ||||| || | ||| || ||||||| | |
Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935
Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995
Query 62090 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146
|| | | || ||||| || ||||| || || || || | ||||| || | || |
Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055
Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115
Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175
Query 62267 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62325
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234
Query 62326 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62384
|| | | ||||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 1235 GTGTTGTTTGATTG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62444
||| || || || | | || ||| | || || || || |
Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 1353
Query 62445 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62502
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 1354 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1411
Query 62503 GAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTAT-CAAATGGATAATTTAAGAG- 62559
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 1412 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 1468
Query 62560 -AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618
|| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 1469 CAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-G 1526
Query 62619 AGATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTG 62677
|||| | | ||||| | || || || || || || || || || || | ||||||
Sbjct 1527 CTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 1586
Query 62678 ACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TAC 62733
|||| |||| || || | || || | ||||| | || | ||| || | |
Sbjct 1587 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCC 1646
Query 62734 AAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791
| | ||||| | |||| || |||| ||||| || || |||| | | |
Sbjct 1647 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 1706
Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851
|||| | || || ||||| | ||| | ||||| || | || | ||| |||
Sbjct 1707 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTA 1766
Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911
||||| || || || |||||||| ||||| ||||||||| | || || || | ||||
Sbjct 1767 CTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 1826
Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT 62971
|| | ||| | | ||| | | | || || || | || | |||| || |
Sbjct 1827 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCT 1884
Query 62972 TCGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGAC 63029
|| ||| | | ||| | ||| |||||||| || | |||| ||| |||||||
Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 1944
Query 63030 ATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGAT 63089
|||||| || ||||| | | ||| || ||| | | || || ||||| |||||||
Sbjct 1945 ATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGAT 2004
Query 63090 CAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148
| |||||||| | || ||| || ||||| | || | ||| || || || |||
Sbjct 2005 CCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 2063
Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208
||| || || |||||| | | || ||| | ||||| || || | || | || |
Sbjct 2064 TTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 2123
Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268
| ||||| || |||||||| || || || | ||||||||| ||||| || ||||||
Sbjct 2124 GCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGT 2183
Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328
| ||| || | || || ||||| |||| ||||| || | ||| || ||| |||||
Sbjct 2184 AGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCA 2243
Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388
|| || | ||| ||||| || || || || |||||||||| | || |||
Sbjct 2244 CGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTC 2303
Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448
|| | |||||||| || || || ||||| || ||| |||| | || || || ||
Sbjct 2304 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 2363
Query 63449 GACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCAT 63508
|| | || | || || || || | ||||| || ||||| || || ||
Sbjct 2364 GAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTAT 2423
Query 63509 TTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCC 63567
|| | || | || ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 2424 TTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGAATACC 2482
Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603
|| || |||||||| | ||| || || || | |||
Sbjct 2483 AACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518
>SEQ14127
Length=21342
Score = 104 bits (114), Expect = 3e-17
Identities = 227/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 32881 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 32939
||||||| || ||||| |||||||| ||| || | | || || | ||||||||
Sbjct 14370 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTGATGTATGTATCG 14312
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
|| | ||| || |||| || || || || || || ||||| || |||||||||
Sbjct 14311 ATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAAACCGTAGAAG 14252
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 14251 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 14192
Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC---- 33115
|||||||| ||||| || || || | || || || ||||| || ||
Sbjct 14191 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 14132
Query 33116 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 33175
| | ||| ||| ||||||||| | | || || || | || | ||||| |||||||
Sbjct 14131 TTGAGTTTGTT-ATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 14073
Query 33176 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| |||||||| |||||||| ||||| | ||||||
Sbjct 14072 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633512124746000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |