Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 125 6e-24 >SEQ14665 Length=6019 Score = 125 bits (138), Expect = 6e-24 Identities = 150/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || |||||| | || || || ||||||| |||| || |||||||| ||||| ||||| Sbjct 2309 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGA- 2367 Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128 || || ||| || ||| ||||| || || ||||| || || ||||| || | | Sbjct 2368 -CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426 Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188 | || || || |||||| | ||||||| |||||| || |||| ||||| || ||||||| Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486 Query 25189 AATCCACGCTACATTTAGTGCT 25210 ||||||| || || || ||||| Sbjct 2487 AATCCACCCTTCACTTGGTGCT 2508 Score = 105 bits (116), Expect = 6e-18 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || |||| ||| | |||||||| ||||| Sbjct 2682 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 2741 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || || || ||| |||| | ||| ||||| || || || ||||| ||| Sbjct 2742 GATACCATTGA--CAATGTCAAGTCAAAGATTCA-AGACAAGGAGGGTATCCCACCGGAC 2798 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || ||||| || || || || || |||| | ||| | |||||| Sbjct 2799 CAACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTAC 2858 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||| | || || ||||| Sbjct 2859 AACATTCAGAAGGAGAGCACTTTGCACTTGGTGCT 2893 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 ||||| || ||||||| |||| || ||||| || |||||||| | ||| Sbjct 2037 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGC 2096 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 || || || || || || ||||| || ||||||||||| | || || || |||||| Sbjct 2097 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2156 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 ||| | ||||||| || || || |||| || || |||||||| || || || || ||| Sbjct 2157 CAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTACTCTCCAT 2216 Query 25203 TTAGTGCT 25210 | || || Sbjct 2217 CTCGTCCT 2224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433248069265025