Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14665 125 6e-24
>SEQ14665
Length=6019
Score = 125 bits (138), Expect = 6e-24
Identities = 150/202 (74%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| |||||| | || || || ||||||| |||| || |||||||| ||||| |||||
Sbjct 2309 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGA- 2367
Query 25071 TCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTA 25128
|| || ||| || ||| ||||| || || ||||| || || ||||| || | |
Sbjct 2368 -CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426
Query 25129 TTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAG 25188
| || || || |||||| | ||||||| |||||| || |||| ||||| || |||||||
Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486
Query 25189 AATCCACGCTACATTTAGTGCT 25210
||||||| || || || |||||
Sbjct 2487 AATCCACCCTTCACTTGGTGCT 2508
Score = 105 bits (116), Expect = 6e-18
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || |||| ||| | |||||||| |||||
Sbjct 2682 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 2741
Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| || || || || || ||| |||| | ||| ||||| || || || ||||| |||
Sbjct 2742 GATACCATTGA--CAATGTCAAGTCAAAGATTCA-AGACAAGGAGGGTATCCCACCGGAC 2798
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|||||||| | || ||||| || || || || || |||| | ||| | ||||||
Sbjct 2799 CAACAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTAC 2858
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||| | || || |||||
Sbjct 2859 AACATTCAGAAGGAGAGCACTTTGCACTTGGTGCT 2893
Score = 82.4 bits (90), Expect = 7e-11
Identities = 131/188 (70%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
||||| || ||||||| |||| || ||||| || |||||||| | |||
Sbjct 2037 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGC 2096
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| || || || || || ||||| || ||||||||||| | || || || ||||||
Sbjct 2097 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2156
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
||| | ||||||| || || || |||| || || |||||||| || || || || |||
Sbjct 2157 CAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTACTCTCCAT 2216
Query 25203 TTAGTGCT 25210
| || ||
Sbjct 2217 CTCGTCCT 2224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433248069265025
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |