Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 150 2e-31 >SEQ14127 Length=21342 Score = 150 bits (166), Expect = 2e-31 Identities = 206/287 (72%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||||||||| | ||||| || |||| || |||| ||||||||| ||||||| Sbjct 14323 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGG 14264 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || |||||||| || | ||| || | ||| || ||||| | || | ||| || || Sbjct 14263 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 14204 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || || |||||||| || ||||||||||| || || || | | || || |||| Sbjct 14203 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAG 14144 Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598 ||||||||| || || |||| ||||||| || || ||||| | |||| ||| Sbjct 14143 CGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCT 14084 Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645 || | ||||| || ||||| || || ||||||||||| | ||| || Sbjct 14083 TCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 14037 Score = 105 bits (116), Expect = 7e-18 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 |||||| ||||||||||| | |||||| || || || || | ||||||| ||| || | Sbjct 14647 GCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAG 14588 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||| | | || || || ||||||||||| || || ||||| || ||| || || Sbjct 14587 ACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAA 14528 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || || || || || ||||| || || | ||| | ||||| | | | || | | Sbjct 14527 GATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAG-AGTTTTTGTCTT 14469 Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326 | |||||| | | |||||| |||||||| |||||||| ||||| | ||| ||||| Sbjct 14468 GAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAGATAG 14412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556755448897400