Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 140 3e-28
SEQ14673 132 4e-26
SEQ14665 129 5e-25
seq515 84.2 2e-11
>seq6733
Length=2883
Score = 140 bits (154), Expect = 3e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || ||||| | || |||||||| |||| || || || ||| || |
Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || || || ||||||||||| || ||||| |||||
Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || |||||||| || | || ||| |||||| | ||||| ||||||
Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621
Query 22399 ATTCAAAAAGAATCCAC 22415
|| ||||| ||||||||
Sbjct 1620 ATCCAAAAGGAATCCAC 1604
>SEQ14673
Length=3941
Score = 132 bits (146), Expect = 4e-26
Identities = 579/899 (64%), Gaps = 33/899 (4%)
Strand=Plus/Plus
Query 129511 TCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCC 129570
||||| | |||||||| ||| ||| |||| |||||||| |||| ||| |||
Sbjct 1479 TCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC 1538
Query 129571 GACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTC 129630
| ||| |||||||||||||| || || ||||| || || |||| || | ||
Sbjct 1539 TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGA 1598
Query 129631 GTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTG 129690
|| || | | | | ||| |||| ||| || ||| ||||| |||||| |
Sbjct 1599 GTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCACAAATGTTGGG 1658
Query 129691 ACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATT 129750
| | ||| || ||||| || ||| || ||| | | | || ||| |||||||||
Sbjct 1659 AGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATT 1718
Query 129751 TCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTG 129810
|| | ||||||||| | ||||||||| | | |||||| ||||| ||| | |||
Sbjct 1719 TCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTTATTG 1778
Query 129811 CAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTC 129870
|| ||||| ||||| | |||| | || | || || ||| ||| | |||| |||||
Sbjct 1779 CATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGG-- 1836
Query 129871 CTGAAC--AAG-TCTCGAGCCTTGATCTGTCTTAC-AAATTTGCCACATTTCTCGTATGC 129926
| || ||| | | | || ||||| ||||| | | | | || ||||| ||
Sbjct 1837 -AGTACCAAAGCTTTTGGGCTTTGAT-GGTCTTGCGACCTCTACCTTCCTTCTCATAACT 1894
Query 129927 CACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAAC---GGCGATTCACG 129983
| |||| || |||||| || ||| | ||| || |||| || |||||
Sbjct 1895 CTCATAGAGAGCTTCAAACTCGTCGCCATATAC---ATCAGCCAACCCAGGACATTCATT 1951
Query 129984 CGGACACATCAAACTCCACATTC-CATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042
|| ||||| | |||| || | | | | ||| || || ||||| || | ||| || |
Sbjct 1952 GGGGCACATTAGTGTCCA-ATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAA 2010
Query 130043 CCCACAGGGCGTACAACAAATC----TCGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098
||||| ||| || || | ||| |||| |||| |||| | ||||| | | |
Sbjct 2011 TCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCT-TCCTTG----CCATGGTTC-T 2064
Query 130099 TTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTG 130156
||| || || ||||| ||| ||| || |||||||| || |||| ||| | ||| | ||
Sbjct 2065 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 2124
Query 130157 CGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCA 130213
| || || ||| || |||||||| |||| | | | |||||| | ||||| |
Sbjct 2125 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTA 2184
Query 130214 ACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCC 130273
||| | | | ||||||| | ||||| || | | ||| | ||| || |
Sbjct 2185 GCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 2244
Query 130274 GAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA-ATCG 130332
| | | |||| | | ||||| || || || || ||| || |||| || || ||
Sbjct 2245 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 2304
Query 130333 CGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391
| || || |||||||| ||| | |||||||| || || || | | |||||| || ||
Sbjct 2305 TG-AGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGA 2362
>SEQ14665
Length=6019
Score = 129 bits (142), Expect = 5e-25
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||||| ||||| || || | || | ||||||||| | |
Sbjct 2682 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 2741
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| ||| |||||||||||||||||||| ||||| || |||
Sbjct 2742 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 2801
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || ||||| || || ||||| |||||| | | || | || |||||||||
Sbjct 2802 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 2861
Query 22399 ATTCAAAAAGA 22409
||||| || ||
Sbjct 2862 ATTCAGAAGGA 2872
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || ||| | || || || || ||||||| || || || | |||| ||| | |||
Sbjct 2309 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGAC 2368
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
|| |||| || || || ||||||||||| ||||| || |||||||||||| | ||
Sbjct 2369 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATC 2428
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
|| || || ||||| | || ||| |||||| | ||| |||||||| |||||||||
Sbjct 2429 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAA 2488
Query 22411 TCCACCATACATTTAGT 22427
|||||| | || || ||
Sbjct 2489 TCCACCCTTCACTTGGT 2505
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365
|||||||| ||||||||||| ||||| || || ||||||||||| ||||| || || ||
Sbjct 2541 ATTCAAGATAAGGAGGGTATCCCACCGGACCAGCAACGTCTTATCTTTGCTGGTAAGCAA 2600
Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425
| |||||| ||||| | || || |||||||| || ||||| ||||| | |||||
Sbjct 2601 CTTGAGGATGGTCGCACTCTATCAGACTACAACATCCAGAAAGAGTCCACACTGCATTTG 2660
Query 22426 GT 22427
||
Sbjct 2661 GT 2662
>seq515
Length=18996
Score = 84.2 bits (92), Expect = 2e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || | ||||| | ||| || ||||
Sbjct 13730 ACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTATTGACAATGTCAAGTCC 13789
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || ||||||||| | || || ||||| ||
Sbjct 13790 AAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTTGATCTTCGCCGGAAAG 13849
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406
|| | ||||| || ||| | || || |||||||| |||||
Sbjct 13850 CAACTCGAGGACGGACGAACCCTTTCAGACTACAACATCCAAAA 13893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419650577891275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |