Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 190 4e-43 >SEQ14127 Length=21342 Score = 190 bits (210), Expect = 4e-43 Identities = 359/517 (69%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || ||||| |||||||| || |||||||| ||| ||||| | || | | | | || Sbjct 14426 CCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 14484 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | || | ||||| || ||| | || || ||||||||||||||| || | || Sbjct 14485 CTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 14544 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||| || ||||||||||||||| || | | |||| | || ||||| ||||| || || Sbjct 14545 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 14604 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | | || || || || |||| ||||| || |||||||| ||||| ||| Sbjct 14605 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCA 14661 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | | |||| || ||| || |||| | ||||||| ||||| || ||||| Sbjct 14662 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGAT 14721 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACC 42990 ||| |||| ||| | || || | || || ||| | || | ||||||||| || Sbjct 14722 CGAACAGGAATTCTTGACCGAGGCTCTTCCTTGTG-CACTTCTTGGCATGAACGCGAACT 14780 Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048 | ||| |||| |||||| ||| ||||||||| | |||||| || | ||| || Sbjct 14781 TGATGAAGCAA-TACATCGAGTTCGTCGCCGATCGTCTCCTAGTTGCTCTTGGTAACGAG 14839 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | | ||||| | | ||| |||||||| |||||||||||||| | | ||||| Sbjct 14840 AAG-GTGTACAAGTCTTCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAA 14898 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||| ||||||||| | || | ||||||||| Sbjct 14899 GACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAG 14935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944160542827600