Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 123 5e-23 >SEQ14127 Length=21342 Score = 123 bits (136), Expect = 5e-23 Identities = 180/252 (71%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 |||||||||| || || || | |||| |||||||| | ||| ||| |||| || | Sbjct 14700 TCATCACAGAGGCTGTCGAGATCGAACAGGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 14759 Query 243563 TTATTGGCATGAACTCTGAAC-TCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || ||||||||||| | |||| | ||| || |||||||| ||||| ||||| || | Sbjct 14760 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTCGCCGATCGTCTC 14818 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || |||||| | ||||| |||||||| || ||||| || | ||| |||||| Sbjct 14819 CTAGTTGCTCTTGGTAACGAGAAGGTGTACAAGTCTTCCAACCCATTCGACTTCATGGAG 14878 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| || || ||| || || ||||||||||| ||| | || |||| || || Sbjct 14879 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 14938 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 14939 GCTGGTGTTATG 14950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102666132612250