Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 91.5 1e-13
SEQ14665 87.8 2e-12
>seq6733
Length=2883
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || ||||| ||||| |||||||| || | | |||||| | ||||| || |||
Sbjct 1598 TGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGC 1657
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|||||||| | || || || ||||| || || || ||||| || || || || || ||
Sbjct 1658 TTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTG 1717
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| || | |||||| || || || || | || | ||| || || ||
Sbjct 1718 GACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTG 1777
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
| ||||| ||||| || |||||
Sbjct 1778 AGGGTTTTGACGAAGATCTGCAT 1800
>SEQ14665
Length=6019
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| || |||||||||||||| | | || | | || || | |||||| || ||| |
Sbjct 2872 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 2813
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
|| | ||||| ||||| || || || || || || ||||| || ||| ||| |||
Sbjct 2812 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 2753
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | ||||| | |||||||| | || | |||||| ||||||||||| || |||
Sbjct 2752 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGACG 2693
Query 64433 AAAATTTGCAT 64443
|| || |||||
Sbjct 2692 AAGATCTGCAT 2682
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499550273449400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |