Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14665 107 2e-18
seq6733 86.0 6e-12
>SEQ14665
Length=6019
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||||||||||| || || || |||||||||||||| |
Sbjct 2490 GATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCG 2431
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | ||| ||||| |||||||| || || || ||||| ||| || || | |
Sbjct 2430 AAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACA 2371
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| |||||| ||||||| || | || || ||||| ||||| ||
Sbjct 2370 TTG-TCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCAGTGAGAGTCTT 2312
Query 138600 TAC 138602
||
Sbjct 2311 GAC 2309
Score = 84.2 bits (92), Expect = 2e-11
Identities = 131/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | ||||||||||||||||| |||||||||
Sbjct 2239 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTC 2180
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || |||||||| || | |||| | |||||||||||||| ||
Sbjct 2179 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 2120
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | || | |||| | || | || ||| | ||||| ||
Sbjct 2119 ATTCCCTCCTTATC-CTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGAC 2061
Query 138567 CTCGA 138571
|||||
Sbjct 2060 CTCGA 2056
>seq6733
Length=2883
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| |||||||||||| | || || || |||||||| || ||||
Sbjct 1607 GATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCG 1666
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| ||||| || || || || || || || || ||||| ||| || || | |
Sbjct 1667 AAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 1726
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | || || ||||||| || | |||||||| || || |||||
Sbjct 1727 TTG-TCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTT 1785
Query 138600 TACAAAAATCTGCATGGCT 138618
|| || ||||||||| ||
Sbjct 1786 GACGAAGATCTGCATGACT 1804
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496168513357200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |