Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 113 6e-20 SEQ14673 102 1e-16 >SEQ14127 Length=21342 Score = 113 bits (124), Expect = 6e-20 Identities = 301/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| || || | ||||||||||||||||||||| || | ||| ||| |||||||| Sbjct 14932 GTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCAT 14873 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || |||||||| || || | | || | | ||| | | | |||||| Sbjct 14872 GAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGCAACT--AGGAGA 14815 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | |||| |||| ||||| | |||| | | |||||| || | || | Sbjct 14814 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCA 14755 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || || || || | ||| ||| || || || ||||| || | || | Sbjct 14754 CAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGACATCT 14695 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTC-CACAGCAAACT 127526 || | || | | | || | | || | |||| |||||| ||| || || | Sbjct 14694 TGGACAGCCTGCTTGCTTGGACGGT-GCTTCAAGTGGGAGAAGAGGAGGCAC-GCGAAGT 14637 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | Sbjct 14636 CGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCA 14577 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 || |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| | Sbjct 14576 AGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAA 14517 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || || |||| ||||||| ||||||| Sbjct 14516 CAGCAGCAAAAGCAACCAGACGCTGAGCAAAGG 14484 >SEQ14673 Length=3941 Score = 102 bits (112), Expect = 1e-16 Identities = 1106/1778 (62%), Gaps = 47/1778 (3%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 757 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 816 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||| || | |||||| || | | |||| | ||| || || |||| Sbjct 817 CCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 876 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | |||||| ||| || || || | ||| || || || || ||||| | || || Sbjct 877 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAA-CA 935 Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 || ||| | || | ||||| || || |||| || ||| || ||| |||| || Sbjct 936 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 994 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823 | || ||||| ||||| ||||| | || || | | |||||| | | ||| Sbjct 995 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGA 1054 Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| | || || | ||||||| | || || ||||| || || || Sbjct 1055 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 1114 Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 || | | || | ||| |||||||| | |||||||| ||||||||||| ||| || Sbjct 1115 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 1173 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 | | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| || Sbjct 1174 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 1233 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057 | | || || ||| | | |||||||| | || | || | | ||| Sbjct 1234 CGTGTTGTTTGATTGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293 Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117 ||| ||||||| | || || || | || | || || || || | ||||| Sbjct 1294 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTC 1348 Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177 ||| | ||| ||| || | || | || | || ||||| || || || Sbjct 1349 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 1408 Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC-ACA 116236 || || || || || | |||||| || || ||||| | | || | Sbjct 1409 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 1468 Query 116237 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296 || ||| |||| || |||||||| ||||||| | || || ||||| | | ||| Sbjct 1469 CAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGC 1527 Query 116297 ACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 ||||| || ||| ||||| || | || | || || | | | || | ||| || Sbjct 1528 TCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 1586 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCATT 116414 || || | || | || |||||||||| | |||| || | | ||| ||||| Sbjct 1587 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATG 1643 Query 116415 G--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 ||| | | || || || || || |||| ||||| || | ||||| || Sbjct 1644 TCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCA 1703 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | ||| || | |||||| || |||||||| || || ||||||||| | ||||||||| Sbjct 1704 GAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGG 1763 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||| | || || ||||||||||| ||||| |||| | || ||||| ||||| Sbjct 1764 TTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGA 1823 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCCC 116649 | || |||||| | | ||| | | |||| | ||| ||| ||| || Sbjct 1824 GCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACCT 1880 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCT 116709 |||| ||| || | ||||| || |||||||| || || | || | | ||| Sbjct 1881 TCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCA 1940 Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769 || | || || || | || | ||| | | || ||||| |||||||||||| Sbjct 1941 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 2000 Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829 || || || ||||| | || |||| ||||| || ||| ||||||| | || || Sbjct 2001 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGG 2060 Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889 || || | |||| || || | | ||| |||||||| || || || || || || Sbjct 2061 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2120 Query 116890 ATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAAT 116943 | || || | |||| ||| | |||| || || || || || ||| || Sbjct 2121 AATGCACCAGGACGCTTG---TTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAA 2177 Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACT 117001 || || ||||| || | ||| || | || | || || || || ||| || | || Sbjct 2178 ACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG-CACC 2236 Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061 | |||| | || ||| |||| | ||||||||| || || || ||||| | Sbjct 2237 AG-TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAG 2295 Query 117062 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 117121 | || | |||| | | || || ||||| || ||| |||| | | ||||||| Sbjct 2296 CACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGA 2355 Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 117181 |||| || | || | ||||||||||||| ||| || || || | ||||| Sbjct 2356 AGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTG 2415 Query 117182 TGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240 |||| || | | |||||| | ||||||||| | | | ||| || || ||| Sbjct 2416 TGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG 2474 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278 |||||||| | | || ||||| | ||| | ||| || Sbjct 2475 TGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 2512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613391132106600