Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14127 113 6e-20
SEQ14673 102 1e-16
>SEQ14127
Length=21342
Score = 113 bits (124), Expect = 6e-20
Identities = 301/453 (66%), Gaps = 8/453 (2%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
|||||| || || | ||||||||||||||||||||| || | ||| ||| ||||||||
Sbjct 14932 GTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCAT 14873
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348
|| || |||||||| || || | | || | | ||| | | | ||||||
Sbjct 14872 GAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGCAACT--AGGAGA 14815
Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408
||||| | |||| |||| ||||| | |||| | | |||||| || | || |
Sbjct 14814 CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCA 14755
Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468
|| || || || || | ||| ||| || || || ||||| || | || |
Sbjct 14754 CAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGACATCT 14695
Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTT-GAAGAGTTC-CACAGCAAACT 127526
|| | || | | | || | | || | |||| |||||| ||| || || |
Sbjct 14694 TGGACAGCCTGCTTGCTTGGACGGT-GCTTCAAGTGGGAGAAGAGGAGGCAC-GCGAAGT 14637
Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586
| |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| |
Sbjct 14636 CGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCA 14577
Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
|| |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| |
Sbjct 14576 AGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAA 14517
Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGG 127679
|| || || |||| ||||||| |||||||
Sbjct 14516 CAGCAGCAAAAGCAACCAGACGCTGAGCAAAGG 14484
>SEQ14673
Length=3941
Score = 102 bits (112), Expect = 1e-16
Identities = 1106/1778 (62%), Gaps = 47/1778 (3%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 757 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 816
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| ||||| || | |||||| || | | |||| | ||| || || ||||
Sbjct 817 CCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 876
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
| |||||| ||| || || || | ||| || || || || ||||| | || ||
Sbjct 877 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAA-CA 935
Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763
|| ||| | || | ||||| || || |||| || ||| || ||| |||| ||
Sbjct 936 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 994
Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823
| || ||||| ||||| ||||| | || || | | |||||| | | |||
Sbjct 995 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGA 1054
Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883
||| | || || | ||||||| | || || ||||| || || ||
Sbjct 1055 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 1114
Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
|| | | || | ||| |||||||| | |||||||| ||||||||||| ||| ||
Sbjct 1115 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 1173
Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002
| | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| ||
Sbjct 1174 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 1233
Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057
| | || || ||| | | |||||||| | || | || | | |||
Sbjct 1234 CGTGTTGTTTGATTGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293
Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117
||| ||||||| | || || || | || | || || || || | |||||
Sbjct 1294 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTC 1348
Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177
||| | ||| ||| || | || | || | || ||||| || || ||
Sbjct 1349 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 1408
Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC-ACA 116236
|| || || || || | |||||| || || ||||| | | || |
Sbjct 1409 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 1468
Query 116237 AAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAG 116296
|| ||| |||| || |||||||| ||||||| | || || ||||| | | |||
Sbjct 1469 CAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGC 1527
Query 116297 ACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355
||||| || ||| ||||| || | || | || || | | | || | ||| ||
Sbjct 1528 TCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTG 1586
Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCATT 116414
|| || | || | || |||||||||| | |||| || | | ||| |||||
Sbjct 1587 ACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATG 1643
Query 116415 G--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472
||| | | || || || || || |||| ||||| || | ||||| ||
Sbjct 1644 TCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCA 1703
Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532
| ||| || | |||||| || |||||||| || || ||||||||| | |||||||||
Sbjct 1704 GAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGG 1763
Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592
|| ||| | || || ||||||||||| ||||| |||| | || ||||| |||||
Sbjct 1764 TTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGA 1823
Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCCC 116649
| || |||||| | | ||| | | |||| | ||| ||| ||| ||
Sbjct 1824 GCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACCT 1880
Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCT 116709
|||| ||| || | ||||| || |||||||| || || | || | | |||
Sbjct 1881 TCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCA 1940
Query 116710 GGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAG 116769
|| | || || || | || | ||| | | || ||||| ||||||||||||
Sbjct 1941 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 2000
Query 116770 AGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 116829
|| || || ||||| | || |||| ||||| || ||| ||||||| | || ||
Sbjct 2001 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGG 2060
Query 116830 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 116889
|| || | |||| || || | | ||| |||||||| || || || || || ||
Sbjct 2061 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2120
Query 116890 ATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAAT 116943
| || || | |||| ||| | |||| || || || || || ||| ||
Sbjct 2121 AATGCACCAGGACGCTTG---TTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAA 2177
Query 116944 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACT 117001
|| || ||||| || | ||| || | || | || || || || ||| || | ||
Sbjct 2178 ACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG-CACC 2236
Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061
| |||| | || ||| |||| | ||||||||| || || || ||||| |
Sbjct 2237 AG-TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAG 2295
Query 117062 CGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGA 117121
| || | |||| | | || || ||||| || ||| |||| | | |||||||
Sbjct 2296 CACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGA 2355
Query 117122 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 117181
|||| || | || | ||||||||||||| ||| || || || | |||||
Sbjct 2356 AGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTG 2415
Query 117182 TGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240
|||| || | | |||||| | ||||||||| | | | ||| || || |||
Sbjct 2416 TGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG 2474
Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGG 117278
|||||||| | | || ||||| | ||| | ||| ||
Sbjct 2475 TGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 2512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613391132106600
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