Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 96.9 6e-15 SEQ14673 93.3 7e-14 >SEQ14127 Length=21342 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || ||||||||||| |||||| || || || || || || ||||||| ||| ||||| Sbjct 14655 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 14596 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | |||| || | ||| | |||||| |||||||| || || | || || | || Sbjct 14595 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 14536 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| ||||| || || ||||| || || || | || | |||| | | ||| Sbjct 14535 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 14476 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131 |||| || |||| || ||||| || || ||||| Sbjct 14475 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTT 14438 >SEQ14673 Length=3941 Score = 93.3 bits (102), Expect = 7e-14 Identities = 196/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 205108 CAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTC--TTTCACC-CT 205164 || ||| ||||||| ||||| ||||| || | ||| ||| | ||| ||||| | | Sbjct 1934 CAACCCAGGACATTCATTGGGGCACATTAGTGTCCA-ATCCG--CGTTCTTTTCAACACG 1990 Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || || || ||||||| | | || || ||||||||||| | | | | || Sbjct 1991 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 2050 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284 | ||| |||||||| | |||||| | | || || |||||||| ||||| | Sbjct 2051 CTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 2110 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | || || | ||| || || | |||||| ||||| ||||| || | || | Sbjct 2111 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 2170 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 |||||||||||| ||||| || || | ||||||| | | ||||| || Sbjct 2171 GTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGT 2218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795004766575600