Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 125 2e-23
SEQ14665 107 5e-18
SEQ14673 84.2 5e-11
seq515 84.2 5e-11
>seq6733
Length=2883
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| | ||| ||||| || |||||||||| ||||||||| | | || | |||||||
Sbjct 1589 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 1648
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || ||||| ||||||||||| ||||| ||||| || || ||||| || |||
Sbjct 1649 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 1708
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||| || |||| ||| || | | ||| || || | ||||| ||
Sbjct 1709 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 1768
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||||||||| ||||| || || || ||
Sbjct 1769 TTACCCGTGAGGGTTTTGACGAAGATCTG 1797
>SEQ14665
Length=6019
Score = 107 bits (118), Expect = 5e-18
Identities = 143/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||| | ||||| || |||||||| ||||||||||| | ||| ||||| ||| ||
Sbjct 2233 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGGTA 2174
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||| || || || || |||||||| | ||||| |||||||| ||||||
Sbjct 2173 CGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 2114
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||||||||| ||| ||| |||| || || | | || || || |
Sbjct 2113 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGG 2054
Query 199589 GTGATCGTCTTACCCGTGA 199607
||||| ||||| || ||||
Sbjct 2053 GTGATGGTCTTGCCGGTGA 2035
>SEQ14673
Length=3941
Score = 84.2 bits (92), Expect = 5e-11
Identities = 185/276 (67%), Gaps = 6/276 (2%)
Strand=Plus/Plus
Query 167740 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 167796
|| |||||||||| || || |||| || |||||||| | ||||| || | ||
Sbjct 1754 GTTCTTTTGGTTACTCTTCTTATTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 1810
Query 167797 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 167856
||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | |
Sbjct 1811 GGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 1870
Query 167857 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 167916
|||| ||||| || || || ||||||||||| |||| || || | || || | ||
Sbjct 1871 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 1930
Query 167917 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 167976
| | || ||| ||| || || || | || |||||| | | | || || |
Sbjct 1931 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 1990
Query 167977 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 168012
|||||||||||| || | | |||| | || |||||
Sbjct 1991 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 2026
>seq515
Length=18996
Score = 84.2 bits (92), Expect = 5e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||||| ||||||||| | | || | ||| || || || ||||||||||||||||
Sbjct 13895 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 13836
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559
| | ||| || |||||||| |||||| || ||||| ||||| ||| || |
Sbjct 13835 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 13776
Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619
| | || || | | || || || | ||||| ||||| ||||| || || || || |
Sbjct 13775 CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 13716
Query 199620 A 199620
|
Sbjct 13715 A 13715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178692986839045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |