Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6733 125 2e-23 SEQ14665 107 5e-18 SEQ14673 84.2 5e-11 seq515 84.2 5e-11 >seq6733 Length=2883 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||||| ||||||||| | | || | ||||||| Sbjct 1589 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 1648 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 1649 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 1708 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | ||| || || | ||||| || Sbjct 1709 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 1768 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || || Sbjct 1769 TTACCCGTGAGGGTTTTGACGAAGATCTG 1797 >SEQ14665 Length=6019 Score = 107 bits (118), Expect = 5e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| ||||||||||| | ||| ||||| ||| || Sbjct 2233 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGGTA 2174 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || |||||||| | ||||| |||||||| |||||| Sbjct 2173 CGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 2114 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| || || | | || || || | Sbjct 2113 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGG 2054 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 2053 GTGATGGTCTTGCCGGTGA 2035 >SEQ14673 Length=3941 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 167740 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 167796 || |||||||||| || || |||| || |||||||| | ||||| || | || Sbjct 1754 GTTCTTTTGGTTACTCTTCTTATTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 1810 Query 167797 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 167856 ||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | | Sbjct 1811 GGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 1870 Query 167857 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 167916 |||| ||||| || || || ||||||||||| |||| || || | || || | || Sbjct 1871 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 1930 Query 167917 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 167976 | | || ||| ||| || || || | || |||||| | | | || || | Sbjct 1931 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 1990 Query 167977 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 168012 |||||||||||| || | | |||| | || ||||| Sbjct 1991 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 2026 >seq515 Length=18996 Score = 84.2 bits (92), Expect = 5e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||| | | || | ||| || || || |||||||||||||||| Sbjct 13895 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 13836 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | ||| || |||||||| |||||| || ||||| ||||| ||| || | Sbjct 13835 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 13776 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | || || | | || || || | ||||| ||||| ||||| || || || || | Sbjct 13775 CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGA 13716 Query 199620 A 199620 | Sbjct 13715 A 13715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178692986839045