Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 136 4e-27 seq6733 123 2e-23 SEQ14665 118 1e-21 seq515 93.3 4e-14 >SEQ14127 Length=21342 Score = 136 bits (150), Expect = 4e-27 Identities = 196/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||||||| || || |||| ||||| | |||||||| ||||| || Sbjct 14321 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAA 14262 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | || ||||| | ||| |||||||| || || Sbjct 14261 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 14202 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || |||||| || ||||| || || || ||||| |||||||| ||| Sbjct 14201 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 14142 Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || || | | | ||| ||| | |||||| |||| ||| | ||| || Sbjct 14141 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 14082 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| ||||||||||| Sbjct 14081 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 14046 Score = 84.2 bits (92), Expect = 2e-11 Identities = 338/521 (65%), Gaps = 11/521 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || || || || | ||||| || || || || || || | Sbjct 14950 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 14891 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 | ||| ||| | ||| || || || ||||||| | ||||| ||| || | Sbjct 14890 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACC 14831 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767 | || | || || || | ||||| |||||||||||||||||| ||| ||||| Sbjct 14830 AAGAG--CAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC- 14774 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || || |||| || || || ||||| | || || ||||| ||| Sbjct 14773 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGA 14715 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || || |||| || || || | | ||| || || ||| ||| || || Sbjct 14714 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 14655 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || |||||| ||| | || || || | ||| ||||| || ||| || Sbjct 14654 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 14595 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 |||| | || | ||| | ||| || || |||||||| || || | ||||| || Sbjct 14594 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 14535 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||| || || || ||||| ||||| |||| | || || | | || Sbjct 14534 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 14475 Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105 || || | ||||| | | ||||| ||||| || ||||| Sbjct 14474 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 14435 >seq6733 Length=2883 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || | Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| |||||||| || | || || Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| ||||| || || || || | |||||||| |||||||||| Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 1620 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGT 1585 >SEQ14665 Length=6019 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| |||| |||||| | |||||| | | Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 2367 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || ||||| || || || | |||||||| | |||||||||||||||||| | Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486 Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || || |||||||| || Sbjct 2487 AATCCACCCTTCACTTGGTGCTCCG 2511 Score = 111 bits (122), Expect = 2e-19 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| ||| ||| | | | |||| |||| Sbjct 2035 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACG--TAAA 2092 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || |||||||||||| | ||||||||||| | || | ||| || Sbjct 2093 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 2152 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 |||||| || || || | || ||| | | |||||| ||||| |||||||| | || || Sbjct 2153 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTACTCT 2212 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | | ||||| Sbjct 2213 CCATCTCGTCCTCCGTCTTCGTGGCGG 2239 >seq515 Length=18996 Score = 93.3 bits (102), Expect = 4e-14 Identities = 134/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||||| ||||| || || || ||||| || ||||||||| | || |||||| || | || Sbjct 13708 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 13767 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | | || || |||| ||||| |||||||||||| | |||||||| Sbjct 13768 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 13827 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 || | || | ||| || || || || || |||| || ||||| ||||||||||| Sbjct 13828 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 13887 Query 38426 CCAAAAGG 38433 |||||||| Sbjct 13888 CCAAAAGG 13895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500078173558400