Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14127 136 4e-27
seq6733 123 2e-23
SEQ14665 118 1e-21
seq515 93.3 4e-14
>SEQ14127
Length=21342
Score = 136 bits (150), Expect = 4e-27
Identities = 196/276 (71%), Gaps = 3/276 (1%)
Strand=Plus/Minus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| || ||||||||| || || |||| ||||| | |||||||| ||||| ||
Sbjct 14321 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATAATTTGGAA 14262
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || |||||| | || ||||| | ||| |||||||| || ||
Sbjct 14261 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 14202
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| || |||||| || ||||| || || || ||||| |||||||| |||
Sbjct 14201 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 14142
Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||| | || || | | | ||| ||| | |||||| |||| ||| | ||| ||
Sbjct 14141 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 14082
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| |||||||||||
Sbjct 14081 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 14046
Score = 84.2 bits (92), Expect = 2e-11
Identities = 338/521 (65%), Gaps = 11/521 (2%)
Strand=Plus/Minus
Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650
||| || ||| || || || || || || | ||||| || || || || || || |
Sbjct 14950 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 14891
Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708
| ||| ||| | ||| || || || ||||||| | ||||| ||| || |
Sbjct 14890 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACC 14831
Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767
| || | || || || | ||||| |||||||||||||||||| ||| |||||
Sbjct 14830 AAGAG--CAACTAGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGC- 14774
Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826
|| | || || || |||| || || || ||||| | || || ||||| |||
Sbjct 14773 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGA 14715
Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886
| || || |||| || || || | | ||| || || ||| ||| || ||
Sbjct 14714 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 14655
Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946
| | | ||| || |||||| ||| | || || || | ||| ||||| || ||| ||
Sbjct 14654 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 14595
Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006
|||| | || | ||| | ||| || || |||||||| || || | ||||| ||
Sbjct 14594 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 14535
Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066
||||||| |||||| || || || ||||| ||||| |||| | || || | | ||
Sbjct 14534 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 14475
Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105
|| || | ||||| | | ||||| ||||| || |||||
Sbjct 14474 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 14435
>seq6733
Length=2883
Score = 123 bits (136), Expect = 2e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || |
Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|| | | | | | | || || |||| ||||| |||||||| || | || ||
Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || || || | ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || ||||| || |||
Sbjct 1620 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGT 1585
>SEQ14665
Length=6019
Score = 118 bits (130), Expect = 1e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313
|||| || || ||||| ||||| |||||||| |||| |||||| | |||||| | |
Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366
Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373
| | | || || |||| ||||| ||||| ||||| | || ||||| || | |
Sbjct 2367 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426
Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433
| | ||| || ||||| || || || | |||||||| | |||||||||||||||||| |
Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486
Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458
|| | || || || |||||||| ||
Sbjct 2487 AATCCACCCTTCACTTGGTGCTCCG 2511
Score = 111 bits (122), Expect = 2e-19
Identities = 151/207 (73%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| ||||||||| |||| |||||| ||| ||| | | | |||| ||||
Sbjct 2035 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACG--TAAA 2092
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || || | || || |||||||||||| | ||||||||||| | || | ||| ||
Sbjct 2093 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 2152
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
|||||| || || || | || ||| | | |||||| ||||| |||||||| | || ||
Sbjct 2153 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTACTCT 2212
Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || ||| | | |||||
Sbjct 2213 CCATCTCGTCCTCCGTCTTCGTGGCGG 2239
>seq515
Length=18996
Score = 93.3 bits (102), Expect = 4e-14
Identities = 134/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
||||| ||||| || || || ||||| || ||||||||| | || |||||| || | ||
Sbjct 13708 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 13767
Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365
| | | | | || || |||| ||||| |||||||||||| | ||||||||
Sbjct 13768 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 13827
Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425
|| | || | ||| || || || || || |||| || ||||| |||||||||||
Sbjct 13828 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 13887
Query 38426 CCAAAAGG 38433
||||||||
Sbjct 13888 CCAAAAGG 13895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500078173558400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |