Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14217 125 3e-23
SEQ14665 93.3 2e-13
seq515 87.8 7e-12
>SEQ14217
Length=14499
Score = 125 bits (138), Expect = 3e-23
Identities = 199/286 (70%), Gaps = 11/286 (4%)
Strand=Plus/Minus
Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379
|||| || |||||||||| || || ||||| || ||||||| || ||||| ||||| |
Sbjct 6983 ATGCTGTTGTTACTGTTCCTGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 6924
Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439
|||| || || || ||||| || ||||| || | |||| |||||||| || || || |
Sbjct 6923 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 6864
Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498
| || || || || | ||||| | || || ||| |||| || | |||
Sbjct 6863 TTGCCTACGGCCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 6814
Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558
|| ||||||||||| |||| ||||| || ||| || | || || || |||||
Sbjct 6813 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 6754
Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604
||| | || |||||||| || || | || |||||||| | ||||
Sbjct 6753 AAGTCTACAAATGGTGACACCCACTTGGGTGGTGAAGACTTCGATA 6708
>SEQ14665
Length=6019
Score = 93.3 bits (102), Expect = 2e-13
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119
|||| || || || ||||| || || || ||||| || || || || || || | ||| |
Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366
Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179
| | | || || || || || ||||| || |||||||| |||||||||||||| |
Sbjct 2367 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426
Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239
| ||| | || |||||||| |||||||| | || || || || || || | || |
Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486
Query 391240 ATGCAACACTTCACTTAGT 391258
| | || |||||||| ||
Sbjct 2487 AATCCACCCTTCACTTGGT 2505
Score = 89.7 bits (98), Expect = 2e-12
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193
|| ||||| |||||||| |||||||| || || ||||| || || || ||| |||| |||
Sbjct 2097 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2156
Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240
|||||||||||||| | || ||| || ||||| ||| | |||||
Sbjct 2157 CAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGA 2203
>seq515
Length=18996
Score = 87.8 bits (96), Expect = 7e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112
|||| ||||| || || || || || || || || || ||||| || || || ||||||
Sbjct 13709 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGAT 13768
Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172
| ||||| | | || || || || || ||||| |||||||| || || ||||||
Sbjct 13769 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 13828
Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213
||||| || ||| | || || ||||| || || ||| ||||
Sbjct 13829 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAAC 13869
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975335274244580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |