Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value SEQ14217 125 3e-23 SEQ14665 93.3 2e-13 seq515 87.8 7e-12 >SEQ14217 Length=14499 Score = 125 bits (138), Expect = 3e-23 Identities = 199/286 (70%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| || |||||||||| || || ||||| || ||||||| || ||||| ||||| | Sbjct 6983 ATGCTGTTGTTACTGTTCCTGCCTACTTCAACGACTCACAACGCCAGGCAACAAAAGACG 6924 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| || || || ||||| || ||||| || | |||| |||||||| || || || | Sbjct 6923 CAGGCCAAATCGCCGGTTTGAACGTTCTCAGAGTGGTTAACGAACCTACTGCTGCCGCAC 6864 Query 451440 TAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || || | ||||| | || || ||| |||| || | ||| Sbjct 6863 TTGCCTACGGCCTCG----------AGAAAGACGAGGACAAAGTTATTGCCGTCTACGAT 6814 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||||||||| |||| ||||| || ||| || | || || || ||||| Sbjct 6813 TTGGGTGGAGGAACCTTCGATATCTCTGTCCTCGAAATACAAAAGGGTGTTTTCGAAGTC 6754 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATA 451604 ||| | || |||||||| || || | || |||||||| | |||| Sbjct 6753 AAGTCTACAAATGGTGACACCCACTTGGGTGGTGAAGACTTCGATA 6708 >SEQ14665 Length=6019 Score = 93.3 bits (102), Expect = 2e-13 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 391060 TCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTG 391119 |||| || || || ||||| || || || ||||| || || || || || || | ||| | Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366 Query 391120 AAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAA 391179 | | | || || || || || ||||| || |||||||| |||||||||||||| | Sbjct 2367 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGA 2426 Query 391180 TTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGG 391239 | ||| | || |||||||| |||||||| | || || || || || || | || | Sbjct 2427 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 2486 Query 391240 ATGCAACACTTCACTTAGT 391258 | | || |||||||| || Sbjct 2487 AATCCACCCTTCACTTGGT 2505 Score = 89.7 bits (98), Expect = 2e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || ||||| |||||||| |||||||| || || ||||| || || || ||| |||| ||| Sbjct 2097 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2156 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 |||||||||||||| | || ||| || ||||| ||| | ||||| Sbjct 2157 CAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGA 2203 >seq515 Length=18996 Score = 87.8 bits (96), Expect = 7e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 391053 AATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGAT 391112 |||| ||||| || || || || || || || || || ||||| || || || |||||| Sbjct 13709 AATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGAT 13768 Query 391113 AACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAA 391172 | ||||| | | || || || || || ||||| |||||||| || || |||||| Sbjct 13769 ACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAA 13828 Query 391173 CGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAAC 391213 ||||| || ||| | || || ||||| || || ||| |||| Sbjct 13829 CGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAAC 13869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975335274244580