Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1428 134 1e-25
SEQ14217 105 5e-17
>seq1428
Length=2374
Score = 134 bits (148), Expect = 1e-25
Identities = 577/899 (64%), Gaps = 15/899 (2%)
Strand=Plus/Plus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
|||| ||||| | ||||| |||||||| | ||| || ||||| || || || || ||
Sbjct 1001 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 1060
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | |||||||||| || || | | || |||| ||| || || || ||
Sbjct 1061 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1120
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438
||| ||| |||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 1121 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1180
Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498
|| | || ||| ||| || || |||||| || ||||| | | ||| | ||||||
Sbjct 1181 GTAGAGAAGACTTCGGACTTCTTGGTAGGAATAGTGGTGTTGCGGTGAATGAGCTTGGTC 1240
Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558
|| ||||| || || || | ||||||||| | || | |||||| | || | ||
Sbjct 1241 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1300
Query 517559 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || | || || || ||| | |||| ||| ||||| || || | ||||||||
Sbjct 1301 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 1360
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 1361 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1420
Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 1421 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1477
Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 1478 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 1535
Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850
| || || | ||| |||||||| ||||| ||| | ||| | || | |
Sbjct 1536 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1595
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
| || || || ||||| | ||| || | ||| || | || || | || ||||| || |
Sbjct 1596 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 1655
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 1656 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1714
Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 1715 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1774
Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089
|| || ||||| ||||| | ||| | || | || | | |||| ||| | || ||
Sbjct 1775 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 1834
Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|| | || ||| |||| ||||| |||||| ||||| | ||| || || || || ||
Sbjct 1835 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 1893
>SEQ14217
Length=14499
Score = 105 bits (116), Expect = 5e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213
||||||| | || ||| || || || || |||| || |||||||| ||||| |||| |
Sbjct 6831 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6890
Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273
||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| |
Sbjct 6891 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6950
Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
|||| || || ||||||||||||| ||| ||||
Sbjct 6951 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780071351445310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |