Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1428 134 1e-25 SEQ14217 105 5e-17 >seq1428 Length=2374 Score = 134 bits (148), Expect = 1e-25 Identities = 577/899 (64%), Gaps = 15/899 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| | ||||| |||||||| | ||| || ||||| || || || || || Sbjct 1001 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 1060 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 1061 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1120 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 ||| ||| |||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 1121 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1180 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || ||| ||| || || |||||| || ||||| | | ||| | |||||| Sbjct 1181 GTAGAGAAGACTTCGGACTTCTTGGTAGGAATAGTGGTGTTGCGGTGAATGAGCTTGGTC 1240 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || ||||| || || || | ||||||||| | || | |||||| | || | || Sbjct 1241 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1300 Query 517559 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | || || || ||| | |||| ||| ||||| || || | |||||||| Sbjct 1301 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 1360 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 1361 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1420 Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 1421 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1477 Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 1478 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 1535 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 | || || | ||| |||||||| ||||| ||| | ||| | || | | Sbjct 1536 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1595 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | || || || ||||| | ||| || | ||| || | || || | || ||||| || | Sbjct 1596 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 1655 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 1656 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1714 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 1715 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1774 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 || || ||||| ||||| | ||| | || | || | | |||| ||| | || || Sbjct 1775 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 1834 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | || ||| |||| ||||| |||||| ||||| | ||| || || || || || Sbjct 1835 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 1893 >SEQ14217 Length=14499 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 518154 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 ||||||| | || ||| || || || || |||| || |||||||| ||||| |||| | Sbjct 6831 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6890 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 ||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| | Sbjct 6891 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6950 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 |||| || || ||||||||||||| ||| |||| Sbjct 6951 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780071351445310