Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1428 277 2e-69 SEQ14673 118 1e-21 SEQ14823 107 2e-18 >seq1428 Length=2374 Score = 277 bits (306), Expect = 2e-69 Identities = 676/1020 (66%), Gaps = 17/1020 (2%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| | || ||||| || || || | ||| ||||| || || || || Sbjct 881 TCATCATCAGCCTTGTACTTCTCAGCCTCAGACAACATGCGCTCAATATCCTCCTTGGAC 940 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | ||||| ||||| ||||| |||||| | ||| || || | |||| || || Sbjct 941 AAGCGACCCTTGTCATTGGTAATGACAATCTTGTTGGACTTTCCGGTACCCTTCTCGACA 1000 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||||| ||||| || ||||||| |||||| | || | || ||||| | Sbjct 1001 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 1060 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT- 6807 || | || || | ||||||||| || | || || | || || | |||| ||| | Sbjct 1061 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1120 Query 6808 ---CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 ||| ||||| ||||| || |||||| ||| || ||||||| ||||| Sbjct 1121 GTGCGCGTTCTT----TCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGA 1176 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || ||||||| || ||||| | ||||| || || || | |||| | | Sbjct 1177 GAAGGTAGAGAAGACTTCGGACTTCTTGGTAGGAATAGTGGTGTTGCGGTGAATGAGCTT 1236 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| ||||| ||| |||| |||||||||| || | || || | || | Sbjct 1237 GGTCATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAG 1296 Query 6985 CAGGTCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 | || | ||| | | | | ||||| | | ||| || || ||||| | || Sbjct 1297 GATCTCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGC 1356 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 |||||||| || |||||||| ||||| || | || || | || |||||||| || || Sbjct 1357 ACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTA 1416 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 || | | | | || || ||||| || || || ||||||||||| ||||| || Sbjct 1417 GTCGGTGATGAGCTTCTGGATACGTGGGATACGGGTGGAACCACCGACCAAGACGATCTC 1476 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT--- 7218 | ||| | ||||| |||||||| | ||| || ||||| || | | Sbjct 1477 GTGGACTCTGGATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 1536 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 | || ||||| | |||| || |||||||| ||||| ||||| || || || || || Sbjct 1537 AGAT---CGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTA 1593 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || | || ||| | | || || ||||| |||| ||| || || | ||||| | Sbjct 1594 GAAGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAG 1653 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || ||||| || || || || || || || | ||||||||| ||||| | |||| | Sbjct 1654 GGTACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCT 1713 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 | ||||||||| || || || || ||||| | |||||| || ||| | || Sbjct 1714 TAAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTC 1773 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 ||| || |||||||||||||| || || || ||||| | |||||||| |||||||| | Sbjct 1774 GAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTC 1833 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || || | || | |||||||| || || || ||||| || || || ||||| ||||| Sbjct 1834 CTCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 1893 Score = 174 bits (192), Expect = 2e-38 Identities = 254/356 (71%), Gaps = 6/356 (2%) Strand=Plus/Plus Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 |||||||| || || ||||| | | || || || | || || || || || |||||| Sbjct 1986 ACCATCGAGGAGATTTCTTCGGGTGTGAATTGCTTAGCCTCGCCCTTGAACTCGACTTCA 2045 Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909 || | || || ||||| ||| | ||| ||||| | | | | ||||| || || Sbjct 2046 ATGACTGGCTT-TCCGC--CACGGTCGATGACCTTGAATGGGAAGTGCTTCATGTCAGCT 2102 Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969 ||||| | | |||| | || || | ||||| |||||||| ||||| || ||||||||| Sbjct 2103 TGGACTTCTGGGTCGGCGAATTTACGACCGATCAGACGCTTAGCATCGAAGACTGTGTTT 2162 Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029 | ||||||||||| ||||||||| || || || ||||| |||||||| | || Sbjct 2163 GTAGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAGACGTTC---GGTGTCT 2219 Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089 || || || ||| |||| || || ||||| || ||||||||||| || |||||||| | Sbjct 2220 GTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCCTTGGTCGTTGGCGATAATTTCGATT 2279 Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 | ||| | | ||| || |||||||| || || || || ||||| |||||||| Sbjct 2280 CTGTCATCACGGAAGATACCCACGCACGAGTAGGTAGTACCCAAATCGATACCGAT 2335 >SEQ14673 Length=3941 Score = 118 bits (130), Expect = 1e-21 Identities = 505/792 (64%), Gaps = 21/792 (3%) Strand=Plus/Plus Query 105291 AATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTC 105350 ||||||||| |||||||| || ||| || || | || || ||||| ||| | Sbjct 1715 AATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTT 1774 Query 105351 ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAAT 105410 ||| || || || ||||||||||| |||| |||| || || |||| | | | ||| Sbjct 1775 ATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAAT 1834 Query 105411 TGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGA----TACCTTCAGATTCGT 105466 | | ||||| || ||| | | |||||| ||||||| || | Sbjct 1835 GGAGTACCAAAGCTTTTGGGCTTTGA----TGGTCTTGCGACCTCTACCTTCCTTCTCAT 1890 Query 105467 ATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG-A 105525 | |||| || ||| |||||||||| | || || || || | | |||| | | | Sbjct 1891 AACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCA 1949 Query 105526 TCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGA 105585 | || || | | || ||||| | | |||||| || |||||||| | ||| ||| Sbjct 1950 TTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGA 2009 Query 105586 ATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGA 105645 ||||||| ||| | || || || || | | ||||| | || || ||| || Sbjct 2010 ATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGG 2069 Query 105646 ATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCT 105705 | || || || |||| || ||| |||||||| || || | ||||||||||| | || Sbjct 2070 AGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC- 2128 Query 105706 TTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAAC 105759 | ||||| || |||| | ||| ||||| || || ||| | ||||||| | Sbjct 2129 --AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGC 2186 Query 105760 ATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGT 105819 || || | || || | ||| | || || || || || | || | | ||||| Sbjct 2187 ATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 2246 Query 105820 ACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTT 105879 | ||||| || | |||||||| ||||| ||| ||| ||||| || Sbjct 2247 ATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTG 2306 Query 105880 ACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGAC 105939 | ||||| |||||||| || ||||| || ||||| | |||| ||||| || ||||| Sbjct 2307 AGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAA 2366 Query 105940 ATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCT 105999 | || | | ||||||||||| ||| || || || | || || |||| | Sbjct 2367 AGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTG 2426 Query 106000 TTCGATA-ACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAAT 106058 || || | | | || ||| || || | | || |||||||||| || |||||||||| Sbjct 2427 TTGGACATAAGGTT-GTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAATACCAAC 2485 Query 106059 AGCGACGCGCAT 106070 || || ||||| Sbjct 2486 GGCAACACGCAT 2497 >SEQ14823 Length=3605 Score = 107 bits (118), Expect = 2e-18 Identities = 207/304 (68%), Gaps = 11/304 (4%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||||| ||| ||||| || || || || ||||| || ||||| || | ||| Sbjct 797 ATCGAAATCTTGACCTCCCAAATGGGTGTCACCAGCGGTAGCCTTGACGGTGAAAACACC 738 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 |||| ||||| || | || ||||| || || || ||||| || || |||| || || Sbjct 737 ACCTTGAATGTGCAAGAGGGAGACATCGAAAGTTCCTCCACCGAGATCGTAAATTAGAAC 678 Query 7576 GTTCGTATCG-TCGTCTTTGTTCTT------ATCGAGACCGTACGCGATAGCCGCCGCCG 7628 ||| ||| || | | | |||| | | | ||||| || || || || || | Sbjct 677 GTT----TCGCTCCTTCTCGCTCTTTCCGGCACCTAAGCCGTATGCAATGGCGGCAGCGG 622 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688 | || || || || ||||| ||| || || |||||||| | |||| || || || | Sbjct 621 TAGGCTCGTTGATGATACGGAGAACATTGAGACCAGCAATGGCACCCGCGTCCTTGGTAG 562 Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748 | || ||||| ||||| |||||||| || || || | ||| || | | ||| |||| Sbjct 561 CCTGACGTTGGTTGTCGTTGAAGTAGGCTGGAACGGTGATGACGGCCTTAGAGACCTTCT 502 Query 7749 TACC 7752 | || Sbjct 501 TGCC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635012640813400