Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1428 277 2e-69
SEQ14673 118 1e-21
SEQ14823 107 2e-18
>seq1428
Length=2374
Score = 277 bits (306), Expect = 2e-69
Identities = 676/1020 (66%), Gaps = 17/1020 (2%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || ||||| || || || | ||| ||||| || || || ||
Sbjct 881 TCATCATCAGCCTTGTACTTCTCAGCCTCAGACAACATGCGCTCAATATCCTCCTTGGAC 940
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
|| | ||||| ||||| ||||| |||||| | ||| || || | |||| || ||
Sbjct 941 AAGCGACCCTTGTCATTGGTAATGACAATCTTGTTGGACTTTCCGGTACCCTTCTCGACA 1000
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| ||||||| ||||| || ||||||| |||||| | || | || ||||| |
Sbjct 1001 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 1060
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT- 6807
|| | || || | ||||||||| || | || || | || || | |||| ||| |
Sbjct 1061 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1120
Query 6808 ---CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864
||| ||||| ||||| || |||||| ||| || ||||||| |||||
Sbjct 1121 GTGCGCGTTCTT----TCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGA 1176
Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924
|| ||||||| || ||||| | ||||| || || || | |||| | |
Sbjct 1177 GAAGGTAGAGAAGACTTCGGACTTCTTGGTAGGAATAGTGGTGTTGCGGTGAATGAGCTT 1236
Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984
|||||| ||||| ||| |||| |||||||||| || | || || | || |
Sbjct 1237 GGTCATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAG 1296
Query 6985 CAGGTCTTGAACAGATTCG--TTCCCT-TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041
| || | ||| | | | | ||||| | | ||| || || ||||| | ||
Sbjct 1297 GATCTCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGC 1356
Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101
|||||||| || |||||||| ||||| || | || || | || |||||||| || ||
Sbjct 1357 ACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTA 1416
Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161
|| | | | | || || ||||| || || || ||||||||||| ||||| ||
Sbjct 1417 GTCGGTGATGAGCTTCTGGATACGTGGGATACGGGTGGAACCACCGACCAAGACGATCTC 1476
Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT--- 7218
| ||| | ||||| |||||||| | ||| || ||||| || | |
Sbjct 1477 GTGGACTCTGGATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 1536
Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278
| || ||||| | |||| || |||||||| ||||| ||||| || || || || ||
Sbjct 1537 AGAT---CGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTA 1593
Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338
||| || | || ||| | | || || ||||| |||| ||| || || | ||||| |
Sbjct 1594 GAAGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAG 1653
Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398
|| ||||| || || || || || || || | ||||||||| ||||| | |||| |
Sbjct 1654 GGTACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCT 1713
Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458
| ||||||||| || || || || ||||| | |||||| || ||| | ||
Sbjct 1714 TAAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTC 1773
Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518
||| || |||||||||||||| || || || ||||| | |||||||| |||||||| |
Sbjct 1774 GAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTC 1833
Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578
|| || | || | |||||||| || || || ||||| || || || ||||| |||||
Sbjct 1834 CTCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 1893
Score = 174 bits (192), Expect = 2e-38
Identities = 254/356 (71%), Gaps = 6/356 (2%)
Strand=Plus/Plus
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849
|||||||| || || ||||| | | || || || | || || || || || ||||||
Sbjct 1986 ACCATCGAGGAGATTTCTTCGGGTGTGAATTGCTTAGCCTCGCCCTTGAACTCGACTTCA 2045
Query 7850 ATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCT 7909
|| | || || ||||| ||| | ||| ||||| | | | | ||||| || ||
Sbjct 2046 ATGACTGGCTT-TCCGC--CACGGTCGATGACCTTGAATGGGAAGTGCTTCATGTCAGCT 2102
Query 7910 TGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTT 7969
||||| | | |||| | || || | ||||| |||||||| ||||| || |||||||||
Sbjct 2103 TGGACTTCTGGGTCGGCGAATTTACGACCGATCAGACGCTTAGCATCGAAGACTGTGTTT 2162
Query 7970 TTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC 8029
| ||||||||||| ||||||||| || || || ||||| |||||||| | ||
Sbjct 2163 GTAGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAGACGTTC---GGTGTCT 2219
Query 8030 GTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACG 8089
|| || || ||| |||| || || ||||| || ||||||||||| || |||||||| |
Sbjct 2220 GTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCCTTGGTCGTTGGCGATAATTTCGATT 2279
Query 8090 CGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145
| ||| | | ||| || |||||||| || || || || ||||| ||||||||
Sbjct 2280 CTGTCATCACGGAAGATACCCACGCACGAGTAGGTAGTACCCAAATCGATACCGAT 2335
>SEQ14673
Length=3941
Score = 118 bits (130), Expect = 1e-21
Identities = 505/792 (64%), Gaps = 21/792 (3%)
Strand=Plus/Plus
Query 105291 AATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGACTTTTC 105350
||||||||| |||||||| || ||| || || | || || ||||| ||| |
Sbjct 1715 AATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTT 1774
Query 105351 ATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTTAATAAT 105410
||| || || || ||||||||||| |||| |||| || || |||| | | | |||
Sbjct 1775 ATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAAT 1834
Query 105411 TGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGA----TACCTTCAGATTCGT 105466
| | ||||| || ||| | | |||||| ||||||| || |
Sbjct 1835 GGAGTACCAAAGCTTTTGGGCTTTGA----TGGTCTTGCGACCTCTACCTTCCTTCTCAT 1890
Query 105467 ATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG-A 105525
| |||| || ||| |||||||||| | || || || || | | |||| | | |
Sbjct 1891 AACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGACATTCA 1949
Query 105526 TCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGA 105585
| || || | | || ||||| | | |||||| || |||||||| | ||| |||
Sbjct 1950 TTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGA 2009
Query 105586 ATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGA 105645
||||||| ||| | || || || || | | ||||| | || || ||| ||
Sbjct 2010 ATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGG 2069
Query 105646 ATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCT 105705
| || || || |||| || ||| |||||||| || || | ||||||||||| | ||
Sbjct 2070 AGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCACC- 2128
Query 105706 TTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAAC 105759
| ||||| || |||| | ||| ||||| || || ||| | ||||||| |
Sbjct 2129 --AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGC 2186
Query 105760 ATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGT 105819
|| || | || || | ||| | || || || || || | || | | |||||
Sbjct 2187 ATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 2246
Query 105820 ACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTT 105879
| ||||| || | |||||||| ||||| ||| ||| ||||| ||
Sbjct 2247 ATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTG 2306
Query 105880 ACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGAC 105939
| ||||| |||||||| || ||||| || ||||| | |||| ||||| || |||||
Sbjct 2307 AGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAA 2366
Query 105940 ATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCT 105999
| || | | ||||||||||| ||| || || || | || || |||| |
Sbjct 2367 AGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTG 2426
Query 106000 TTCGATA-ACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAAT 106058
|| || | | | || ||| || || | | || |||||||||| || ||||||||||
Sbjct 2427 TTGGACATAAGGTT-GTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAATACCAAC 2485
Query 106059 AGCGACGCGCAT 106070
|| || |||||
Sbjct 2486 GGCAACACGCAT 2497
>SEQ14823
Length=3605
Score = 107 bits (118), Expect = 2e-18
Identities = 207/304 (68%), Gaps = 11/304 (4%)
Strand=Plus/Minus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
||||||||||| ||| ||||| || || || || ||||| || ||||| || | |||
Sbjct 797 ATCGAAATCTTGACCTCCCAAATGGGTGTCACCAGCGGTAGCCTTGACGGTGAAAACACC 738
Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575
|||| ||||| || | || ||||| || || || ||||| || || |||| || ||
Sbjct 737 ACCTTGAATGTGCAAGAGGGAGACATCGAAAGTTCCTCCACCGAGATCGTAAATTAGAAC 678
Query 7576 GTTCGTATCG-TCGTCTTTGTTCTT------ATCGAGACCGTACGCGATAGCCGCCGCCG 7628
||| ||| || | | | |||| | | | ||||| || || || || || |
Sbjct 677 GTT----TCGCTCCTTCTCGCTCTTTCCGGCACCTAAGCCGTATGCAATGGCGGCAGCGG 622
Query 7629 TTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCG 7688
| || || || || ||||| ||| || || |||||||| | |||| || || || |
Sbjct 621 TAGGCTCGTTGATGATACGGAGAACATTGAGACCAGCAATGGCACCCGCGTCCTTGGTAG 562
Query 7689 CTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCT 7748
| || ||||| ||||| |||||||| || || || | ||| || | | ||| ||||
Sbjct 561 CCTGACGTTGGTTGTCGTTGAAGTAGGCTGGAACGGTGATGACGGCCTTAGAGACCTTCT 502
Query 7749 TACC 7752
| ||
Sbjct 501 TGCC 498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635012640813400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |