Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 181 1e-40
SEQ14127 129 7e-25
>SEQ14673
Length=3941
Score = 181 bits (200), Expect = 1e-40
Identities = 1146/1808 (63%), Gaps = 59/1808 (3%)
Strand=Plus/Minus
Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615
|||||||||||||| | ||||| | |||| ||||| | ||| ||||
Sbjct 2568 TCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAACGTCCAC 2509
Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675
| | ||| ||||||| || || | ||||| || || || |||||||| | | |
Sbjct 2508 AACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCCATTG 2449
Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735
|||| ||| || |||||| |||| ||||| | || || || ||| ||
Sbjct 2448 AGACCTACAACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCG 2389
Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795
||||||||||| | | || | || || ||||| |||| | |||||||| |
Sbjct 2388 CTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTA 2329
Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855
| |||| ||||| | || |||| |||||| ||||| || ||||| ||||
Sbjct 2328 TTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTA 2269
Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGT 111914
| || | |||| || || | |||| | || | || ||||| || |||
Sbjct 2268 TTGGTCTCAACATTCACAGAATCCGTGCCA-CTGGTGCATACATCGCCGGTACCAACGGT 2210
Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974
| || | || || | || ||||| || || || ||| ||| || | || || ||
Sbjct 2209 AACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGAC 2150
Query 111975 CAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028
|||| ||| ||||| | || | ||||||||||||||||| ||||||||
Sbjct 2149 CAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCACGCA 2093
Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088
||| | | |||||||| || | || ||||| || | || || | || |||
Sbjct 2092 GATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGT 2033
Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148
||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| |
Sbjct 2032 GATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCG 1973
Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCCGGTCTCTCCGATGCCGTGGGTGAG 112205
||||| | || | || || ||| | | || || | | |||| || ||
Sbjct 1972 GATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGGCGAC 1916
Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263
||||||||||| ||||| | || ||| | ||| || | | | | || ||| |
Sbjct 1915 GAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACCATCA 1858
Query 112264 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323
||| | | ||| | | |||||| || ||||||||||||| || | |||| |
Sbjct 1857 AAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCA 1798
Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383
|||||||||| || || || || | |||||||| |||||||| | || || |
Sbjct 1797 TGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTCGGCACCATTCGCA 1738
Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443
| ||||| | || |||||||| | |||| | | | |||||| ||| ||||
Sbjct 1737 GCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGCTGTA 1678
Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGATTAT 112502
|| | || || || |||||||| | | |||||| | || | | || | ||||
Sbjct 1677 ACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGATTTC 1619
Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562
|||| || ||||| ||||| || || | |||| | |||| | ||||| |
Sbjct 1618 CAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGACATC 1559
Query 112563 AATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621
|| | |||||||| ||| || | || ||| | | || || || || | | |
Sbjct 1558 AACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCATCGACCTATCGCTGT 1500
Query 112622 CGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 112681
|||||| |||||||| || |||| ||| | | ||| ||||||| || ||
Sbjct 1499 CGGTGTTCAAGGTCTTGCCGATGCTTTCTTGGCTCTTCGATTACCATTTGAATCACCTGA 1440
Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741
||| ||| | |||| | || || || || || || ||||| ||| |||| |
Sbjct 1439 AGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGA-CATCG 1382
Query 112742 TTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797
| || ||| | || || |||| ||| | ||||| || | || || || || | |
Sbjct 1381 TCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACTTACGAAGGCTCACCTGTCT 1324
Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 112856
| | || | ||||||| |||||||||| | || | ||| | | | | ||||||
Sbjct 1323 CGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACCGACCTTTGGGACTGG 1265
Query 112857 GA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915
|| ||| | ||| || ||||| | | ||| | || |||||| | | | || ||
Sbjct 1264 GATAGCT-TGAAGAAATCAATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGCTCC 1206
Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975
|||||||||||| |||| | ||||| | ||| || || ||||||||||| |||||
Sbjct 1205 TATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATACAC 1146
Query 112976 GACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033
| |||||||| ||| | | | | || ||||| || |||| ||| |||
Sbjct 1145 TTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CCATG 1089
Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT 113089
|| | | || || || || || | ||||| | | |||||| | | ||||
Sbjct 1088 GCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTATCAT 1029
Query 113090 -GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148
| ||| |||||||| |||||||| ||| | ||||||| ||| || |||
Sbjct 1028 CGCTGA----CGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGGCAC 973
Query 113149 TGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206
| ||| || || ||||| | || | ||| | | || | |||||||| || ||
Sbjct 972 TTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGACCG 915
Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 113264
|||| ||| |||| | ||||| | | ||||| | |||| || || || |||
Sbjct 914 TGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 857
Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324
|||| | |||| ||||| | ||||||| ||||||||| || || |||||
Sbjct 856 GGCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGACCGGAATGTAC 797
Query 113325 TACCTCCG 113332
||||||||
Sbjct 796 TACCTCCG 789
>SEQ14127
Length=21342
Score = 129 bits (142), Expect = 7e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166
|||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| |
Sbjct 14420 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 14479
Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226
| | |||||||| |||| || | || ||||| ||||||||| ||||||||| |||
Sbjct 14480 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 14538
Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286
|| ||| |||| | |||||||||||||| || | ||| | |||||| |||||
Sbjct 14539 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 14598
Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319
||| ||||| ||||| ||||| || || |||||
Sbjct 14599 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 14631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620624963297200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |