Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 181 1e-40 SEQ14127 129 7e-25 >SEQ14673 Length=3941 Score = 181 bits (200), Expect = 1e-40 Identities = 1146/1808 (63%), Gaps = 59/1808 (3%) Strand=Plus/Minus Query 111556 TCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATGGAAACCCCAC 111615 |||||||||||||| | ||||| | |||| ||||| | ||| |||| Sbjct 2568 TCAAGACCCTCGAGCGATCGTACCTTCTTCGACTCGATGGAAAAGTTGCAGAACGTCCAC 2509 Query 111616 AGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGG 111675 | | ||| ||||||| || || | ||||| || || || |||||||| | | | Sbjct 2508 AACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCCATTG 2449 Query 111676 AGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACG 111735 |||| ||| || |||||| |||| ||||| | || || || ||| || Sbjct 2448 AGACCTACAACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCG 2389 Query 111736 CTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAA 111795 ||||||||||| | | || | || || ||||| |||| | |||||||| | Sbjct 2388 CTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTA 2329 Query 111796 TCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTA 111855 | |||| ||||| | || |||| |||||| ||||| || ||||| |||| Sbjct 2328 TTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTA 2269 Query 111856 TCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAAATGGT 111914 | || | |||| || || | |||| | || | || ||||| || ||| Sbjct 2268 TTGGTCTCAACATTCACAGAATCCGTGCCA-CTGGTGCATACATCGCCGGTACCAACGGT 2210 Query 111915 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAC 111974 | || | || || | || ||||| || || || ||| ||| || | || || || Sbjct 2209 AACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGAC 2150 Query 111975 CAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCG 112028 |||| ||| ||||| | || | ||||||||||||||||| |||||||| Sbjct 2149 CAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCACGCA 2093 Query 112029 GATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGC 112088 ||| | | |||||||| || | || ||||| || | || || | || ||| Sbjct 2092 GATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGT 2033 Query 112089 GATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGC 112148 ||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| | Sbjct 2032 GATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCG 1973 Query 112149 AATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCCGGTCTCTCCGATGCCGTGGGTGAG 112205 ||||| | || | || || ||| | | || || | | |||| || || Sbjct 1972 GATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGGCGAC 1916 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC--GACGGTGC 112263 ||||||||||| ||||| | || ||| | ||| || | | | | || ||| | Sbjct 1915 GAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACCATCA 1858 Query 112264 CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 ||| | | ||| | | |||||| || ||||||||||||| || | |||| | Sbjct 1857 AAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCA 1798 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 |||||||||| || || || || | |||||||| |||||||| | || || | Sbjct 1797 TGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTCGGCACCATTCGCA 1738 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 | ||||| | || |||||||| | |||| | | | |||||| ||| |||| Sbjct 1737 GCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGCTGTA 1678 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGATTAT 112502 || | || || || |||||||| | | |||||| | || | | || | |||| Sbjct 1677 ACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGATTTC 1619 Query 112503 GAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGA 112562 |||| || ||||| ||||| || || | |||| | |||| | ||||| | Sbjct 1618 CAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGACATC 1559 Query 112563 AATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621 || | |||||||| ||| || | || ||| | | || || || || | | | Sbjct 1558 AACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCATCGACCTATCGCTGT 1500 Query 112622 CGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGA 112681 |||||| |||||||| || |||| ||| | | ||| ||||||| || || Sbjct 1499 CGGTGTTCAAGGTCTTGCCGATGCTTTCTTGGCTCTTCGATTACCATTTGAATCACCTGA 1440 Query 112682 AGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAG 112741 ||| ||| | |||| | || || || || || || ||||| ||| |||| | Sbjct 1439 AGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGA-CATCG 1382 Query 112742 TTCG--GAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 112797 | || ||| | || || |||| ||| | ||||| || | || || || || | | Sbjct 1381 TCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACTTACGAAGGCTCACCTGTCT 1324 Query 112798 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 112856 | | || | ||||||| |||||||||| | || | ||| | | | | |||||| Sbjct 1323 CGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACCGACCTTTGGGACTGG 1265 Query 112857 GA-CGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 || ||| | ||| || ||||| | | ||| | || |||||| | | | || || Sbjct 1264 GATAGCT-TGAAGAAATCAATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGCTCC 1206 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 |||||||||||| |||| | ||||| | ||| || || ||||||||||| ||||| Sbjct 1205 TATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATACAC 1146 Query 112976 GACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033 | |||||||| ||| | | | | || ||||| || |||| ||| ||| Sbjct 1145 TTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CCATG 1089 Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCTCAT 113089 || | | || || || || || | ||||| | | |||||| | | |||| Sbjct 1088 GCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTATCAT 1029 Query 113090 -GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGT 113148 | ||| |||||||| |||||||| ||| | ||||||| ||| || ||| Sbjct 1028 CGCTGA----CGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGGCAC 973 Query 113149 TGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGATCG 113206 | ||| || || ||||| | || | ||| | | || | |||||||| || || Sbjct 972 TTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGACCG 915 Query 113207 TGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATG 113264 |||| ||| |||| | ||||| | | ||||| | |||| || || || ||| Sbjct 914 TGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACAATG 857 Query 113265 TCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTAT 113324 |||| | |||| ||||| | ||||||| ||||||||| || || ||||| Sbjct 856 GGCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGACCGGAATGTAC 797 Query 113325 TACCTCCG 113332 |||||||| Sbjct 796 TACCTCCG 789 >SEQ14127 Length=21342 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 102166 |||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| | Sbjct 14420 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 14479 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 | | |||||||| |||| || | || ||||| ||||||||| ||||||||| ||| Sbjct 14480 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 14538 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || ||| |||| | |||||||||||||| || | ||| | |||||| ||||| Sbjct 14539 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 14598 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 102319 ||| ||||| ||||| ||||| || || ||||| Sbjct 14599 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 14631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620624963297200