Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 167 3e-36
SEQ14127 116 4e-21
>SEQ14673
Length=3941
Score = 167 bits (184), Expect = 3e-36
Identities = 623/963 (65%), Gaps = 23/963 (2%)
Strand=Plus/Plus
Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331
||| || | ||||||||||| || || | || || || || ||| | | | |
Sbjct 1647 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 1706
Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391
||||| | |||||| || ||||| ||||| || |||| || | |||||| || ||
Sbjct 1707 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTA 1766
Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451
|| |||||||||||||| || |||||| |||| | || || || || || | |
Sbjct 1767 CTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 1826
Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCT 110509
| |||||||| | ||| | | ||| || || |||| | | ||||||||
Sbjct 1827 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCT 1884
Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569
||| || | || | | ||||| || | || || ||||||| | ||||
Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGA 1943
Query 110570 CCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628
| || | ||| || | || | ||||| | || ||||| | ||||||||| ||
Sbjct 1944 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGA 2003
Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688
|| |||||||||| || ||||||| |||||| || | ||||| | || |||||
Sbjct 2004 TCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 2063
Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748
|| || |||| || || | | ||| | |||||| || || |||||||| || |
Sbjct 2064 TTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 2123
Query 110749 GATCCCTTACGACGAC-----CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802
| || | |||| || ||| ||| || || | || ||| ||||| ||
Sbjct 2124 GCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 2180
Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATT 110861
| ||||| || | || || | ||| | ||| || ||||| || | || || | |
Sbjct 2181 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGT 2239
Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921
|||||| || ||| || | | ||||||||| || || ||| || |||||
Sbjct 2240 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 2299
Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980
||| |||| ||| |||||||||||||||| || |||| | |||| || ||||
Sbjct 2300 TGTCT-TGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 2358
Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040
| || || | ||||| | || || || || ||| |||||||| | || || |||
Sbjct 2359 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 2418
Query 111041 ACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098
| | ||| |||||| |||||| || || | ||| | ||| | ||||||
Sbjct 2419 A--GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTG 2476
Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158
|||||||| |||||| ||||||| ||| | ||| || ||| | |||||||| |
Sbjct 2477 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAG 2536
Query 111159 ACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACG 111218
|| ||||||| ||| |||||||||| || |||||| ||| ||| || ||
Sbjct 2537 TCGAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAATTGAAGTCTCG 2596
Query 111219 ATC 111221
|||
Sbjct 2597 ATC 2599
>SEQ14127
Length=21342
Score = 116 bits (128), Expect = 4e-21
Identities = 347/521 (67%), Gaps = 21/521 (4%)
Strand=Plus/Minus
Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267
|||||||| || ||||| |||||||| || ||||| || | || |||||||| |||||
Sbjct 14931 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 14872
Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326
||||| || || || || || | | | | ||| ||||| || |||||
Sbjct 14871 AAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTT-ACCAAGAGCAACTAGGAGACG 14813
Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386
||||| ||| ||||||| |||| |||| | || ||||| || | || |||
Sbjct 14812 ATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 14753
Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGA-----TG 119441
|| ||||| ||| | ||| | || |||||||| ||||| ||| | | || ||
Sbjct 14752 AGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGACATCTTG 14693
Query 119442 GAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCAA 119499
|| | | || || | || ||| | ||| ||| | || | | | ||| | |
Sbjct 14692 GACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CGA 14640
Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559
| || ||| || |||||||| || |||||||||||||| ||| || |||| ||
Sbjct 14639 AGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCA 14580
Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619
| | || | ||||| ||||| ||||| | | || |||| |||||||||||||
Sbjct 14579 TCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCT 14520
Query 119620 CCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCAC 119675
| ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| |||
Sbjct 14519 CAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCAT 14461
Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716
||| |||||||| ||| || || ||||| || || ||
Sbjct 14460 CTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 14420
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588864573103000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |