Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 167 3e-36 SEQ14127 116 4e-21 >SEQ14673 Length=3941 Score = 167 bits (184), Expect = 3e-36 Identities = 623/963 (65%), Gaps = 23/963 (2%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTG 110331 ||| || | ||||||||||| || || | || || || || ||| | | | | Sbjct 1647 ACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAG 1706 Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 ||||| | |||||| || ||||| ||||| || |||| || | |||||| || || Sbjct 1707 TATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTA 1766 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 || |||||||||||||| || |||||| |||| | || || || || || | | Sbjct 1767 CTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCC 1826 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTCCT 110509 | |||||||| | ||| | | ||| || || |||| | | |||||||| Sbjct 1827 TCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG--ACCTCTACCTTCCT 1884 Query 110510 CCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCG 110569 ||| || | || | | ||||| || | || || ||||||| | |||| Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCA-ACCCAGGA 1943 Query 110570 CCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGG 110628 | || | ||| || | || | ||||| | || ||||| | ||||||||| || Sbjct 1944 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGA 2003 Query 110629 TCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTG 110688 || |||||||||| || ||||||| |||||| || | ||||| | || ||||| Sbjct 2004 TCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTC 2063 Query 110689 AGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATG 110748 || || |||| || || | | ||| | |||||| || || |||||||| || | Sbjct 2064 TTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAAT 2123 Query 110749 GATCCCTTACGACGAC-----CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGACC 110802 | || | |||| || ||| ||| || || | || ||| ||||| || Sbjct 2124 GCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 2180 Query 110803 CTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATT 110861 | ||||| || | || || | ||| | ||| || ||||| || | || || | | Sbjct 2181 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACC-AGT 2239 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 |||||| || ||| || | | ||||||||| || || ||| || ||||| Sbjct 2240 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 2299 Query 110922 C-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGC 110980 ||| |||| ||| |||||||||||||||| || |||| | |||| || |||| Sbjct 2300 TGTCT-TGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 2358 Query 110981 AAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGA 111040 | || || | ||||| | || || || || ||| |||||||| | || || ||| Sbjct 2359 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 2418 Query 111041 ACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTG 111098 | | ||| |||||| |||||| || || | ||| | ||| | |||||| Sbjct 2419 A--GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTG 2476 Query 111099 AATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAAC 111158 |||||||| |||||| ||||||| ||| | ||| || ||| | |||||||| | Sbjct 2477 AATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAG 2536 Query 111159 ACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACG 111218 || ||||||| ||| |||||||||| || |||||| ||| ||| || || Sbjct 2537 TCGAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTATTGGTAATTGAAGTCTCG 2596 Query 111219 ATC 111221 ||| Sbjct 2597 ATC 2599 >SEQ14127 Length=21342 Score = 116 bits (128), Expect = 4e-21 Identities = 347/521 (67%), Gaps = 21/521 (4%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || ||||| |||||||| || ||||| || | || |||||||| ||||| Sbjct 14931 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 14872 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 ||||| || || || || || | | | | ||| ||||| || ||||| Sbjct 14871 AAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTT-ACCAAGAGCAACTAGGAGACG 14813 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 ||||| ||| ||||||| |||| |||| | || ||||| || | || ||| Sbjct 14812 ATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 14753 Query 119387 CGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGA-----TG 119441 || ||||| ||| | ||| | || |||||||| ||||| ||| | | || || Sbjct 14752 AGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGACATCTTG 14693 Query 119442 GAGTGAATAGTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACA--ACTCTACGGCAA 119499 || | | || || | || ||| | ||| ||| | || | | | ||| | | Sbjct 14692 GACAGCCTGCTTGCT-TGGACGGT--GCTTC--AAGTGGGAGAAGAGGAGGC-ACG-CGA 14640 Query 119500 ATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCA 119559 | || ||| || |||||||| || |||||||||||||| ||| || |||| || Sbjct 14639 AGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCA 14580 Query 119560 TGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCT 119619 | | || | ||||| ||||| ||||| | | || |||| ||||||||||||| Sbjct 14579 TCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCT 14520 Query 119620 CCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAG-ACTTGTC--GAA-CCAC 119675 | ||| || ||||| | ||||||| ||| |||||| ||| ||||| ||| ||| Sbjct 14519 CAACAGCAGCAAAAGCAACCAGACGCTGAGC-AAAGGTAGAGTTTTTGTCTTGAATCCAT 14461 Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 ||| |||||||| ||| || || ||||| || || || Sbjct 14460 CTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGT 14420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588864573103000