Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 251 8e-62
>SEQ14673
Length=3941
Score = 251 bits (278), Expect = 8e-62
Identities = 1163/1815 (64%), Gaps = 53/1815 (3%)
Strand=Plus/Plus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649
||||| |||||||| ||||||||||| || |||||| | | |||||| ||||
Sbjct 789 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAGTA 848
Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709
| |||| ||| || || || |||| || ||||| ||| |||||||| |||
Sbjct 849 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 908
Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767
|||||| | || ||||| | || | | ||| | || | ||||| || ||
Sbjct 909 GCACCACGGTCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 966
Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827
||| || |||||| ||| |||| || | | || |||||||| ||||| || |
Sbjct 967 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAG 1026
Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887
|| || | | |||||| | | ||||| | || || | ||||| |||| |
Sbjct 1027 CGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 1086
Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944
| ||| ||| |||| || ||||| || | | | | ||| |||||||| |
Sbjct 1087 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 1143
Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004
||||| ||||||||||| || || ||| | ||||| | |||| |||||||||||
Sbjct 1144 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 1203
Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064
| || || | | | |||||| || | ||| | || ||||| || ||| | ||
Sbjct 1204 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATTGATTTCTTCAAGCTAT 1263
Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122
||||||| | | | | ||| | || | |||||||||| ||||||| | |||||
Sbjct 1264 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 1322
Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181
| ||| | ||| || || | |||||||||| ||| | | ||| | ||| |
Sbjct 1323 GAGACAGGTGAG--CCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 1380
Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241
|| || | ||||| || || ||||| ||||| || || | | ||||||||
Sbjct 1381 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 1440
Query 106242 CATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACC 106299
|| ||| ||||||| ||| | | | || ||| |||| || ||||||||||||||
Sbjct 1441 CAGGTGATTCAAATG-GTAATCGAAGAGCCAAGAAAG-CATCGGCAAGACCTTGAACACC 1498
Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAAT 106358
| | | ||||||| || || | ||| ||||| || ||| ||||| || | |
Sbjct 1499 GACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGT 1557
Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418
| ||||||||| ||| | ||| || ||| | | || | || ||||| ||||
Sbjct 1558 TGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTT 1617
Query 106419 CATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATGCCA 106475
|||| |||| | ||| ||||| ||| | |||| || || || || ||||
Sbjct 1618 GGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCA 1674
Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535
| || || ||| ||||| | | ||| || | ||||||||| ||||| ||||
Sbjct 1675 AGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGG 1734
Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595
| || ||| || || | ||||||||||||||||| || ||||| ||||||||||| |
Sbjct 1735 AGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAA 1794
Query 106596 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGG 106655
||||| | || | || ||||| || || | || |||||| | | ||| | | ||
Sbjct 1795 GCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGG 1854
Query 106656 CTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 106712
| | |||| ||| | | || ||| ||| || | ||||| |||||||
Sbjct 1855 C---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAA 1911
Query 106713 ACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAGACC 106769
|||| || || | || | | || || | | ||| || || | || | ||
Sbjct 1912 ACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTGTCC 1968
Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829
| | | || ||||| ||||||||||| || || |||||||||| || | || |
Sbjct 1969 AATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 2028
Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 106889
|||| | || | ||||| | || ||||| ||| | || |||||||| | |
Sbjct 2029 GATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAA 2088
Query 106890 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 106943
||| |||||||| ||||||||||||||||| | || | ||||| |||
Sbjct 2089 CATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTCCAC 2145
Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003
|||| | || || | || ||| ||| || || || ||||| || | || || | |
Sbjct 2146 CTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGG 2205
Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063
| | ||| || || || || | | |||| | | || |||| | |
Sbjct 2206 AGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGAC 2265
Query 107064 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 107123
||||||| ||||| || ||||| ||||| | | || || |||| ||||| |
Sbjct 2266 CAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCAT 2325
Query 107124 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 107183
|| ||||||||| | | || |||||||| || | ||| | | ||||||||
Sbjct 2326 CAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTAC 2385
Query 107184 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTAT 107242
|||| ||| || || || | ||||| |||| || | | |||||| || |||
Sbjct 2386 CAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTGTAG 2444
Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302
||||| | | | ||||| || || ||||| || || | ||| |||||||| | |||
Sbjct 2445 GTCTCAATGGCGCTCTCAATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATT 2504
Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 107361
| ||| || ||| | | |||||||| || |||| || | || ||| |||||
Sbjct 2505 TGTTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAGGGT 2563
Query 107362 TTTGAGACCAAAGTA 107376
|||| || |||||
Sbjct 2564 CTTGAATCCGAAGTA 2578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589869183007400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |