Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 251 8e-62 >SEQ14673 Length=3941 Score = 251 bits (278), Expect = 8e-62 Identities = 1163/1815 (64%), Gaps = 53/1815 (3%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAG 105649 ||||| |||||||| ||||||||||| || |||||| | | |||||| |||| Sbjct 789 CGGAGGTAGTACATTCCGGTCTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAGTA 848 Query 105650 AGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAG 105709 | |||| ||| || || || |||| || ||||| ||| |||||||| ||| Sbjct 849 ATCTTGCCCATTGTGGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAG 908 Query 105710 CGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTGC 105767 |||||| | || ||||| | || | | ||| | || | ||||| || || Sbjct 909 GCACCACGGTCAGCGGCCATTTGAACAA--TTGTTCGTTGAGAAATCTCCCAGACGGTCT 966 Query 105768 GGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCT 105827 ||| || |||||| ||| |||| || | | || |||||||| ||||| || | Sbjct 967 TGTAAAGTGCCTTGATGTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAG 1026 Query 105828 TGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGA 105887 || || | | |||||| | | ||||| | || || | ||||| |||| | Sbjct 1027 CGATGATACGGTTCTTCATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCA 1086 Query 105888 G--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTCG 105944 | ||| ||| |||| || ||||| || | | | | ||| |||||||| | Sbjct 1087 GCCATGG--GTTAACAACTTGGAATTCTCCAGCCAAGACACGACG-AGAGTAGATGTTAG 1143 Query 105945 TCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCA 106004 ||||| ||||||||||| || || ||| | ||||| | |||| ||||||||||| Sbjct 1144 AAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCA 1203 Query 106005 TTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 | || || | | | |||||| || | ||| | || ||||| || ||| | || Sbjct 1204 TAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATTGATTTCTTCAAGCTAT 1263 Query 106065 CCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTG 106122 ||||||| | | | | ||| | || | |||||||||| ||||||| | ||||| Sbjct 1264 CCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAAGTTCGCCCTTC 1322 Query 106123 G-GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGC 106181 | ||| | ||| || || | |||||||||| ||| | | ||| | ||| | Sbjct 1323 GAGACAGGTGAG--CCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAATCTCAACGG 1380 Query 106182 TCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTT 106241 || || | ||||| || || ||||| ||||| || || | | |||||||| Sbjct 1381 ACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTT 1440 Query 106242 CATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACACC 106299 || ||| ||||||| ||| | | | || ||| |||| || |||||||||||||| Sbjct 1441 CAGGTGATTCAAATG-GTAATCGAAGAGCCAAGAAAG-CATCGGCAAGACCTTGAACACC 1498 Query 106300 CAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAAT 106358 | | | ||||||| || || | ||| ||||| || ||| ||||| || | | Sbjct 1499 GACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGT 1557 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | ||||||||| ||| | ||| || ||| | | || | || ||||| |||| Sbjct 1558 TGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTT 1617 Query 106419 CATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGATTGATGCCA 106475 |||| |||| | ||| ||||| ||| | |||| || || || || |||| Sbjct 1618 GGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCA 1674 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535 | || || ||| ||||| | | ||| || | ||||||||| ||||| |||| Sbjct 1675 AGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGG 1734 Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGA 106595 | || ||| || || | ||||||||||||||||| || ||||| ||||||||||| | Sbjct 1735 AGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAA 1794 Query 106596 GCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGG 106655 ||||| | || | || ||||| || || | || |||||| | | ||| | | || Sbjct 1795 GCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGG 1854 Query 106656 CTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAA 106712 | | |||| ||| | | || ||| ||| || | ||||| ||||||| Sbjct 1855 C---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAA 1911 Query 106713 ACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGAAAAGAGACC 106769 |||| || || | || | | || || | | ||| || || | || | || Sbjct 1912 ACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACATTAGTGTCC 1968 Query 106770 ATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGA 106829 | | | || ||||| ||||||||||| || || |||||||||| || | || | Sbjct 1969 AATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 2028 Query 106830 GATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 106889 |||| | || | ||||| | || ||||| ||| | || |||||||| | | Sbjct 2029 GATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAA 2088 Query 106890 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 106943 ||| |||||||| ||||||||||||||||| | || | ||||| ||| Sbjct 2089 CATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACGCTTGTTTCCAC 2145 Query 106944 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 107003 |||| | || || | || ||| ||| || || || ||||| || | || || | | Sbjct 2146 CTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGG 2205 Query 107004 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 107063 | | ||| || || || || | | |||| | | || |||| | | Sbjct 2206 AGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGAC 2265 Query 107064 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 107123 ||||||| ||||| || ||||| ||||| | | || || |||| ||||| | Sbjct 2266 CAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATCATAAATACCAT 2325 Query 107124 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 107183 || ||||||||| | | || |||||||| || | ||| | | |||||||| Sbjct 2326 CAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTAC 2385 Query 107184 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTAT 107242 |||| ||| || || || | ||||| |||| || | | |||||| || ||| Sbjct 2386 CAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACATAAGGTTGTAG 2444 Query 107243 GTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATG 107302 ||||| | | | ||||| || || ||||| || || | ||| |||||||| | ||| Sbjct 2445 GTCTCAATGGCGCTCTCAATATCGTCACCGTGAATACCAACGGCAACACGCATGATCATT 2504 Query 107303 TATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGT 107361 | ||| || ||| | | |||||||| || |||| || | || ||| ||||| Sbjct 2505 TGTTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC-GCTCGAGGGT 2563 Query 107362 TTTGAGACCAAAGTA 107376 |||| || ||||| Sbjct 2564 CTTGAATCCGAAGTA 2578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589869183007400