Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_015280.1
Length=181044
Score E
Sequences producing significant alignments: (Bits) Value
seq2273 170 2e-37
seq8012 167 3e-36
seq7711 120 4e-22
>seq2273
Length=3718
Score = 170 bits (188), Expect = 2e-37
Identities = 216/295 (73%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||||| | || | | ||| | |||||| | || | |||||||||||||| |||
Sbjct 2620 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 2679
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
||||| |||||||| | || ||||| ||| ||||||| || || | | | |||
Sbjct 2680 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 2739
Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
||| || | | | || || ||||||| ||||| ||||||||||| ||||| |
Sbjct 2740 GTGTCGAAGGACAGATTG--GGCGATAAAGCTATGAGATTGGCACTACAGACCAGAGAAC 2797
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984
|||||||||| || || || || || ||||| ||||||||||||| ||| |||||||||
Sbjct 2798 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 2857
Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039
||||| | ||||||||| | || |||||| | | ||||| | ||||| ||
Sbjct 2858 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 2912
>seq8012
Length=1659
Score = 167 bits (184), Expect = 3e-36
Identities = 215/295 (73%), Gaps = 4/295 (1%)
Strand=Plus/Minus
Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806
||||||||| | || | | ||| | |||||| | || | |||||||||||||| |||
Sbjct 1099 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 1040
Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866
||||| |||||||| | || ||||| ||| ||||||| || || | | | |||
Sbjct 1039 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 980
Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924
||| || | | | || || |||| || ||||| ||||||||||| ||||| |
Sbjct 979 GTGTCGAAGGACAGATTG--GGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAAC 922
Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984
|||||||||| || || || || || ||||| ||||||||||||| ||| |||||||||
Sbjct 921 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 862
Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039
||||| | ||||||||| | || |||||| | | ||||| | ||||| ||
Sbjct 861 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 807
>seq7711
Length=2071
Score = 120 bits (132), Expect = 4e-22
Identities = 169/235 (72%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930
|||||||||||||||||| |||| |||||||| ||| | | |||| | | | | ||
Sbjct 1833 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAACCAGAGATTAAGGCTGCT-TG 1775
Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990
| | || |||||| | | || ||||| || || | || || || ||| | ||||| ||
Sbjct 1774 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 1715
Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050
| || | || ||||| |||||| ||||| |||||||| ||| | || ||
Sbjct 1714 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 1655
Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105
|||||||||||||||||||| || ||||| || || || || || || ||||||
Sbjct 1654 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 1600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 579103220178400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |