Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2273 170 2e-37 seq8012 167 3e-36 seq7711 120 4e-22 >seq2273 Length=3718 Score = 170 bits (188), Expect = 2e-37 Identities = 216/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||| | || | | ||| | |||||| | || | |||||||||||||| ||| Sbjct 2620 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 2679 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 ||||| |||||||| | || ||||| ||| ||||||| || || | | | ||| Sbjct 2680 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 2739 Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 ||| || | | | || || ||||||| ||||| ||||||||||| ||||| | Sbjct 2740 GTGTCGAAGGACAGATTG--GGCGATAAAGCTATGAGATTGGCACTACAGACCAGAGAAC 2797 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984 |||||||||| || || || || || ||||| ||||||||||||| ||| ||||||||| Sbjct 2798 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 2857 Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039 ||||| | ||||||||| | || |||||| | | ||||| | ||||| || Sbjct 2858 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 2912 >seq8012 Length=1659 Score = 167 bits (184), Expect = 3e-36 Identities = 215/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||| | || | | ||| | |||||| | || | |||||||||||||| ||| Sbjct 1099 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 1040 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 ||||| |||||||| | || ||||| ||| ||||||| || || | | | ||| Sbjct 1039 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 980 Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 ||| || | | | || || |||| || ||||| ||||||||||| ||||| | Sbjct 979 GTGTCGAAGGACAGATTG--GGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAAC 922 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984 |||||||||| || || || || || ||||| ||||||||||||| ||| ||||||||| Sbjct 921 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 862 Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039 ||||| | ||||||||| | || |||||| | | ||||| | ||||| || Sbjct 861 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 807 >seq7711 Length=2071 Score = 120 bits (132), Expect = 4e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930 |||||||||||||||||| |||| |||||||| ||| | | |||| | | | | || Sbjct 1833 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAACCAGAGATTAAGGCTGCT-TG 1775 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 | | || |||||| | | || ||||| || || | || || || ||| | ||||| || Sbjct 1774 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 1715 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | || | || ||||| |||||| ||||| |||||||| ||| | || || Sbjct 1714 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 1655 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 |||||||||||||||||||| || ||||| || || || || || || |||||| Sbjct 1654 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579103220178400