Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2273 159 4e-34 seq8012 154 2e-32 seq7711 132 6e-26 >seq2273 Length=3718 Score = 159 bits (176), Expect = 4e-34 Identities = 211/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||| | || | | ||| | |||||| | || | ||||| |||||||| ||| Sbjct 2620 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 2679 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| |||||||| | || ||||| ||| ||||||| || || | | | ||| Sbjct 2680 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 2739 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 ||| || || || ||||||| ||||| ||||||||||| ||||| ||| Sbjct 2740 GTGTCGAAGGACAGATTGGGCGATAAAGCTATGAGATTGGCACTACAGACCAGAGAACAG 2799 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 ||||||||||| || || || || ||||| |||||||||| |||||| ||||||||||| Sbjct 2800 CATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTAAT 2859 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 158714 ||| | |||||||| | || |||||| | | ||||| | ||||| || Sbjct 2860 ATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 2912 >seq8012 Length=1659 Score = 154 bits (170), Expect = 2e-32 Identities = 210/293 (72%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 || |||||| | || | | ||| | |||||| | || | ||||| |||||||| ||| Sbjct 1099 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 1040 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| |||||||| | || ||||| ||| ||||||| || || | | | ||| Sbjct 1039 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 980 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 ||| || || || |||| || ||||| ||||||||||| ||||| ||| Sbjct 979 GTGTCGAAGGACAGATTGGGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAACAG 920 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 ||||||||||| || || || || ||||| |||||||||| |||||| ||||||||||| Sbjct 919 CATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTAAT 860 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 158714 ||| | |||||||| | || |||||| | | ||||| | ||||| || Sbjct 859 ATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 807 >seq7711 Length=2071 Score = 132 bits (146), Expect = 6e-26 Identities = 172/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 |||||||||||||| ||| |||| |||||||| ||| || | || | | | | | || Sbjct 1833 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAACCAGAGATTAAGGCTGCT-TG 1775 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 | | ||||||||| || | || ||||| || || | || ||||| ||| | ||||| || Sbjct 1774 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 1715 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | || | || |||| |||||| ||||| |||||||| ||| | || || Sbjct 1714 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 1655 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTA 159780 ||||||||||||||||||||| || ||||| || || || || || ||||||||| Sbjct 1654 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 1600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587939948063600