Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 161 2e-34 seq6733 129 1e-24 seq515 111 3e-19 SEQ14673 100 6e-16 >SEQ14665 Length=6019 Score = 161 bits (178), Expect = 2e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | |||| ||| || ||||| |||||||| | ||||||||| ||||| || | ||| Sbjct 2885 GTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTG 2826 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | ||| |||||||| || || || || || ||||||||||| || Sbjct 2825 CTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTT 2766 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | |||||| || |||||||| || || ||||||||| | |||| |||||||| || Sbjct 2765 TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGT 2706 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||| || ||||| | ||||| Sbjct 2705 CAAAGTCTTGACGAAGATCTGCAT 2682 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| |||||||| || ||||| ||| || || | ||||||||||| || Sbjct 2500 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTG 2441 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| |||||||| | |||||||| || ||||||||||| || ||||| || || || Sbjct 2440 TTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 2381 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || || || || || || | ||||| || || Sbjct 2380 GGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCAGT 2321 Query 195117 CAAAGTTTTTACGA 195130 | ||| || |||| Sbjct 2320 GAGAGTCTTGACGA 2307 Score = 93.3 bits (102), Expect = 9e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || || ||||| ||||| |||||||| || || ||| |||| || | |||||||| Sbjct 2221 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAG-GTACGGCCATCTTC 2163 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || || ||||||||||| | || |||||||| || ||||| || || || || || Sbjct 2162 AAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTG 2103 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| || ||| ||||| || || || || Sbjct 2102 AATCTTGCTCTTTACGTTGTCGATAGTATC 2073 Score = 93.3 bits (102), Expect = 9e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || ||||||||||| || || ||||| || | ||||| | ||||| || || ||| Sbjct 2656 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGACCATCCTCAAGTTGC 2597 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||||| || |||||||| ||||| ||||| || || || || || || |||||||| Sbjct 2596 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGAAT 2541 >seq6733 Length=2883 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||||||| || ||||| || ||||| |||| ||| || | ||||||||||| || Sbjct 1597 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 1656 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || ||||| || || || || || || || ||||| || || || Sbjct 1657 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 1716 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || ||||| || || ||| || || ||||| | || || || || Sbjct 1717 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 1776 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | ||||| Sbjct 1777 GAGGGTTTTGACGAAGATCTGCAT 1800 >seq515 Length=18996 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 ||||| || ||||| || | ||| |||| || || ||||| ||||| || |||||||| Sbjct 13893 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 13834 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 | ||||||||||| || ||||| || || ||||| || || || |||||| || ||| Sbjct 13833 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 13774 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || || || || || |||||||| | |||||||| || | || || ||||| Sbjct 13773 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 13715 >SEQ14673 Length=3941 Score = 100 bits (110), Expect = 6e-16 Identities = 187/275 (68%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646 ||||||| ||| | |||| | | ||||| ||||||||| | || || | || | ||||| Sbjct 2028 TTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATT 1969 Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706 ||| || | || ||||||||| ||||| | | |||||| ||||| |||||| | Sbjct 1968 GGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTG 1909 Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAG 160766 | |||| ||||| || || || || || || |||| ||| | | || |||||| Sbjct 1908 AAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAA 1849 Query 160767 AACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACA 160826 | || ||| | ||| || | || ||| |||| || | || || || |||| Sbjct 1848 AGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCATGCTTTACA 1789 Query 160827 AGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||||| | | ||||||||||| |||||| Sbjct 1788 AGGATGCATGCAATAAGAAGAGTAACCAAAAGAAC 1754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109266452448545