Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14665 161 2e-34
seq6733 129 1e-24
seq515 111 3e-19
SEQ14673 100 6e-16
>SEQ14665
Length=6019
Score = 161 bits (178), Expect = 2e-34
Identities = 158/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| | |||| ||| || ||||| |||||||| | ||||||||| ||||| || | |||
Sbjct 2885 GTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTG 2826
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || || ||||| | ||| |||||||| || || || || || ||||||||||| ||
Sbjct 2825 CTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTT 2766
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| |||||| || |||||||| || || ||||||||| | |||| |||||||| ||
Sbjct 2765 TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGT 2706
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
|||||| || ||||| | |||||
Sbjct 2705 CAAAGTCTTGACGAAGATCTGCAT 2682
Score = 129 bits (142), Expect = 1e-24
Identities = 145/194 (75%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||| ||||| |||||||| || ||||| ||| || || | ||||||||||| ||
Sbjct 2500 GTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTG 2441
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||||| |||||||| | |||||||| || ||||||||||| || ||||| || || ||
Sbjct 2440 TTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 2381
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || |||||||| || || || || || || | ||||| || ||
Sbjct 2380 GGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCAGT 2321
Query 195117 CAAAGTTTTTACGA 195130
| ||| || ||||
Sbjct 2320 GAGAGTCTTGACGA 2307
Score = 93.3 bits (102), Expect = 9e-14
Identities = 112/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990
|| || || ||||| ||||| |||||||| || || ||| |||| || | ||||||||
Sbjct 2221 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAG-GTACGGCCATCTTC 2163
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || || ||||||||||| | || |||||||| || ||||| || || || || ||
Sbjct 2162 AAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTG 2103
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||| || ||| ||||| || || || ||
Sbjct 2102 AATCTTGCTCTTTACGTTGTCGATAGTATC 2073
Score = 93.3 bits (102), Expect = 9e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || ||||||||||| || || ||||| || | ||||| | ||||| || || |||
Sbjct 2656 TGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGACCATCCTCAAGTTGC 2597
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053
||||| || |||||||| ||||| ||||| || || || || || || ||||||||
Sbjct 2596 TTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGAAT 2541
>seq6733
Length=2883
Score = 129 bits (142), Expect = 1e-24
Identities = 151/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
|||||||||||| || ||||| || ||||| |||| ||| || | ||||||||||| ||
Sbjct 1597 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 1656
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
||| || |||||||| || ||||| || || || || || || || ||||| || || ||
Sbjct 1657 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 1716
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| || || ||||| || || ||| || || ||||| | || || || ||
Sbjct 1717 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 1776
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| ||||| ||||| | |||||
Sbjct 1777 GAGGGTTTTGACGAAGATCTGCAT 1800
>seq515
Length=18996
Score = 111 bits (122), Expect = 3e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012
||||| || ||||| || | ||| |||| || || ||||| ||||| || ||||||||
Sbjct 13893 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 13834
Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072
| ||||||||||| || ||||| || || ||||| || || || |||||| || |||
Sbjct 13833 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 13774
Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
|| || || || || || |||||||| | |||||||| || | || || |||||
Sbjct 13773 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 13715
>SEQ14673
Length=3941
Score = 100 bits (110), Expect = 6e-16
Identities = 187/275 (68%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||||| ||| | |||| | | ||||| ||||||||| | || || | || | |||||
Sbjct 2028 TTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATT 1969
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| || | || ||||||||| ||||| | | |||||| ||||| |||||| |
Sbjct 1968 GGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTTG 1909
Query 160707 AGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAG 160766
| |||| ||||| || || || || || || |||| ||| | | || ||||||
Sbjct 1908 AAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCCCAAA 1849
Query 160767 AACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACA 160826
| || ||| | ||| || | || ||| |||| || | || || || ||||
Sbjct 1848 AGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCATTCATGCTTTACA 1789
Query 160827 AGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861
||||||| | | ||||||||||| ||||||
Sbjct 1788 AGGATGCATGCAATAAGAAGAGTAACCAAAAGAAC 1754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109266452448545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |