Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq1428 141 7e-28
SEQ14823 102 7e-16
seq1513 87.8 1e-11
>seq1428
Length=2374
Score = 141 bits (156), Expect = 7e-28
Identities = 263/384 (68%), Gaps = 3/384 (1%)
Strand=Plus/Minus
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269
|| || |||||||||||||| || ||||| || | || || ||||| |||||||| |
Sbjct 1383 AACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCTATCCTTTCTGGTGAC 1324
Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326
||| || || |||| || | || | ||| | ||||| | || | |||||||||
Sbjct 1323 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 1264
Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386
| || || | ||| || ||||| || || || | | || || |||||||||
Sbjct 1263 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACTATTCCTACC 1204
Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446
|| || || || || ||||| | || ||||| ||| ||| ||| |||||| |
Sbjct 1203 AAGAAGTCCGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 1144
Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506
|| || || ||||||| ||| || || || || | || || | || | |
Sbjct 1143 TTCGAGGGTGAAAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAGCTCACT 1084
Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566
|||||||| |||||||||||||| || || || || || || || |||||||| ||||||
Sbjct 1083 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAGATCGAGGTCACCTTCGATATTGATGCC 1024
Query 552567 AATGGAATTTTGAATGTGACTGCT 552590
|| || || ||||||| |||||
Sbjct 1023 AACGGTATCATGAATGTCTCTGCT 1000
>SEQ14823
Length=3605
Score = 102 bits (112), Expect = 7e-16
Identities = 248/373 (66%), Gaps = 2/373 (1%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
|||||||||||||| ||||| |||||||| | || || || | ||||| ||| |
Sbjct 1092 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 1151
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
||||| ||||| | || ||||| ||||| || || | || | | ||| |
Sbjct 1152 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 1211
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073
| |||| ||| || ||| | | | | || || || | || || || |
Sbjct 1212 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 1270
Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133
|||||| | | ||| | || || || |||||||| || |||| || || ||||||||
Sbjct 1271 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 1330
Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193
||||||||| | |||||||| ||| | | || || | ||||| || || ||
Sbjct 1331 TGGATCTACCCGTATTCCTAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 1390
Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253
|| | |||| |||| || |||||||||||||| || ||||| || ||||||| |
Sbjct 1391 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 1450
Query 552254 TATTCTTTCTGGA 552266
||| || || |||
Sbjct 1451 TATCCTCTCAGGA 1463
>seq1513
Length=35742
Score = 87.8 bits (96), Expect = 1e-11
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045
||| ||| || ||||| ||| | ||||||||||| ||| || ||||| ||||||
Sbjct 34587 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 34646
Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105
|| |||||||| ||| | | || || ||||| || | | |||||| || ||||| |
Sbjct 34647 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 34706
Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143
||||| || |||| ||| || || |||||||| ||
Sbjct 34707 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 34744
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028495592941150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |