Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14127 147 4e-30
>SEQ14127
Length=21342
Score = 147 bits (162), Expect = 4e-30
Identities = 351/525 (67%), Gaps = 27/525 (5%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
||||||||| || ||||| ||||| |||||||||||||| || | | |||||||||||
Sbjct 14935 CTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTC 14876
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC-AGGCCCATCTGTTCC 47953
||||||| ||| ||||||| | || |||||| ||| | | | || ||
Sbjct 14875 CATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGCAACT----- 14821
Query 47954 AGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATG 48013
|| || |||| |||||| |||||||||||| ||| | | | ||||||||| |
Sbjct 14820 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 14761
Query 48014 AGGGACACGGGCAA-AGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072
|| | ||| | || ||||| || | || |||| || |||| || || || |
Sbjct 14760 AGTG-CACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGAT 14702
Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTT------GGCATAGAG 48126
| | ||| |||| | | ||| | | ||||||| || ||||
Sbjct 14701 GACAT-CTT------GGACA--GCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGAAGAG 14651
Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186
| ||| || ||||| | || | ||||| || ||| ||||||| | ||||||||
Sbjct 14650 GAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGT 14591
Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246
|||||||| ||| | || | || ||||||||||| || | ||||| || ||| |||
Sbjct 14590 GAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAA 14531
Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306
|||||||||||| || || || || || || | || | || | || ||| |||||
Sbjct 14530 GAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTTTGTC 14471
Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351
| ||||| | |||||||| || |||||||| ||||| ||
Sbjct 14470 TTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGG 14426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931356565638400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |