Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 132 9e-26 >SEQ14127 Length=21342 Score = 132 bits (146), Expect = 9e-26 Identities = 338/512 (66%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872 |||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| ||| Sbjct 14430 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 14488 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | |||| ||||| || ||||||||||| ||||||||||| ||||| || || || || Sbjct 14489 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 14548 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 | ||||||||||||||| || || ||| | || || ||||| ||||| ||||| Sbjct 14549 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 14607 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||| | | || || |||||||| | || || || ||||| |||| | | |||||| Sbjct 14608 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 14664 Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 | ||| || |||| || | ||| | | |||||| ||||||||| ||||||| Sbjct 14665 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTCGAGATCG 14723 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 | |||| || | ||||||||| | | | Sbjct 14724 AACAGGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 14783 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA 26229 ||| |||||||| |||| || ||||| | ||| || || | || || || | Sbjct 14784 TGAAGCAATACATCGAGTTCGTCGCCGATCGTCTCCTAGTTGC-TCTTGGTAACGAGAAG 14842 Query 26230 CTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | |||| | | ||||| |||||||| ||||| ||||| || | | ||| ||||| Sbjct 14843 GTGTACAAGTCTTCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 14902 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || ||||| || || ||||| || Sbjct 14903 AACTTCTTCGAGAAGAGAGTTGGTGACTACCA 14934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928669074174400