Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1428 120 2e-21
SEQ14665 111 1e-18
seq515 93.3 3e-13
>seq1428
Length=2374
Score = 120 bits (132), Expect = 2e-21
Identities = 453/700 (65%), Gaps = 23/700 (3%)
Strand=Plus/Minus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||| || |||||||||||||| | || ||||| || | || || |
Sbjct 1689 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCTTCCTCTGCCCAGACATCC 1630
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605
| ||| | || ||||| || || || || || || || |||| || || | |||
Sbjct 1629 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 1571
Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665
|| || || |||| || ||||| || || | | || || || | || ||
Sbjct 1570 TTTCGAGGAACTTTGCCAGGACCTCTTCCGATCTACCACCAACCCAGTCGACCGTGTCCT 1511
Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725
| || | || | |||||||| |||||| || || || | || || ||||| ||
Sbjct 1510 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 1451
Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780
| || ||| || |||| ||| ||||| || || || ||||| || |
Sbjct 1450 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 1396
Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838
|| |||| | || |||||||| ||||||||||| || ||||| ||||| || ||||
Sbjct 1395 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCTA 1338
Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893
| | || ||| | ||| | || ||| || | || | ||| | || || |
Sbjct 1337 TCCTTTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 1280
Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953
||| | || | ||| | || || | ||| || ||||| || || ||| || | ||
Sbjct 1279 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 1220
Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013
|| |||| || ||| || || |||| || || || | || ||||| ||| |
Sbjct 1219 CACCACTATTCCTACCAAGAAGTCCGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 1160
Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073
||| || ||| |||| || |||||||||| ||| || || || ||| || ||
Sbjct 1159 TGTCTTGATTCAAGTCTTCGAGGGTGAAAGAACGCGCACAAAGGACAACAACCTTCTCGG 1100
Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133
|| || | || |||||||| |||||||| | || ||||| || || || || ||
Sbjct 1099 AAAGTTCGAGCTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAGATCGAGGTCAC 1040
Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
|| ||||||||||| || ||||| | ||||| |||||
Sbjct 1039 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 1000
>SEQ14665
Length=6019
Score = 111 bits (122), Expect = 1e-18
Identities = 158/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | || | || || || || || || ||||||| |||||
Sbjct 2903 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 2844
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||| || | |||||||||||||| || | || ||||| || || || || ||
Sbjct 2843 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 2784
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||||||||||||| |||||| ||||| ||||| | | | | || |||
Sbjct 2783 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 2724
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || ||||| | |||||| ||||| || ||
Sbjct 2723 -TGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTG 2685
>seq515
Length=18996
Score = 93.3 bits (102), Expect = 3e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| || ||||||||||| || || || | ||||||||| || || |||||||| ||||||
Sbjct 13860 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 13801
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| |||||| ||||||||||||| | |||||||| ||
Sbjct 13800 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 13741
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 13740 GTCTTTCCCGTAAGGGTCTTGACGAA 13715
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267529986414980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |