Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1428 120 2e-21 SEQ14665 111 1e-18 seq515 93.3 3e-13 >seq1428 Length=2374 Score = 120 bits (132), Expect = 2e-21 Identities = 453/700 (65%), Gaps = 23/700 (3%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||| || |||||||||||||| | || ||||| || | || || | Sbjct 1689 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCTTCCTCTGCCCAGACATCC 1630 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605 | ||| | || ||||| || || || || || || || |||| || || | ||| Sbjct 1629 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 1571 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 || || || |||| || ||||| || || | | || || || | || || Sbjct 1570 TTTCGAGGAACTTTGCCAGGACCTCTTCCGATCTACCACCAACCCAGTCGACCGTGTCCT 1511 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | || | || | |||||||| |||||| || || || | || || ||||| || Sbjct 1510 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 1451 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780 | || ||| || |||| ||| ||||| || || || ||||| || | Sbjct 1450 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 1396 Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 || |||| | || |||||||| ||||||||||| || ||||| ||||| || |||| Sbjct 1395 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCTA 1338 Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893 | | || ||| | ||| | || ||| || | || | ||| | || || | Sbjct 1337 TCCTTTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 1280 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 ||| | || | ||| | || || | ||| || ||||| || || ||| || | || Sbjct 1279 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 1220 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 || |||| || ||| || || |||| || || || | || ||||| ||| | Sbjct 1219 CACCACTATTCCTACCAAGAAGTCCGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 1160 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || ||| |||| || |||||||||| ||| || || || ||| || || Sbjct 1159 TGTCTTGATTCAAGTCTTCGAGGGTGAAAGAACGCGCACAAAGGACAACAACCTTCTCGG 1100 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 || || | || |||||||| |||||||| | || ||||| || || || || || Sbjct 1099 AAAGTTCGAGCTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAGATCGAGGTCAC 1040 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || ||||||||||| || ||||| | ||||| ||||| Sbjct 1039 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 1000 >SEQ14665 Length=6019 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | || | || || || || || || ||||||| ||||| Sbjct 2903 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 2844 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | |||||||||||||| || | || ||||| || || || || || Sbjct 2843 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 2784 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| |||||| ||||| ||||| | | | | || ||| Sbjct 2783 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 2724 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || ||||| | |||||| ||||| || || Sbjct 2723 -TGTAATGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTG 2685 >seq515 Length=18996 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| || || || | ||||||||| || || |||||||| |||||| Sbjct 13860 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 13801 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| ||||||||||||| | |||||||| || Sbjct 13800 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 13741 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || || ||||| ||||| Sbjct 13740 GTCTTTCCCGTAAGGGTCTTGACGAA 13715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267529986414980