Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 233 2e-56 >SEQ14673 Length=3941 Score = 233 bits (258), Expect = 2e-56 Identities = 1180/1851 (64%), Gaps = 61/1851 (3%) Strand=Plus/Minus Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204 ||||| || |||| ||||| ||| || | || |||| || |||||||| | | Sbjct 2578 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 2520 Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264 ||| ||||| | ||| ||||||| || || | || || ||||| || || ||||| Sbjct 2519 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGA 2460 Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323 | | | ||||| ||| || |||||| | | || |||| ||||| | || | Sbjct 2459 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 2401 Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383 | || ||| |||||||||||| | | ||| | || |||||||| || | | | Sbjct 2400 CACTTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGA 2341 Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443 |||||||| || | ||||| |||| || || | | ||||| ||||| || Sbjct 2340 AGGAGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 2281 Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503 ||||| |||||||| | |||| || | | |||| | | || | Sbjct 2280 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 2221 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || ||| | || | || || | || ||||| || || || ||| ||| || Sbjct 2220 GTACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTA 2161 Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616 | || || | |||| || ||||| ||| ||| || ||||| | || Sbjct 2160 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 2105 Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676 || ||||| || ||| | | |||||||| || | ||| ||||| || | ||||| Sbjct 2104 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAA 2045 Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 | || | ||||| || | || |||||||||| || || ||||||||||| ||| Sbjct 2044 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 1985 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793 || || | | ||| | || | || || ||| | | || || | | || Sbjct 1984 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 1928 Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850 | || || ||||||||||| ||||| | ||||| |||| ||||||| | Sbjct 1927 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 1868 Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910 || ||| | |||| | ||||| | | |||||| | | || || ||||| Sbjct 1867 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACC 1811 Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970 |||| |||| ||||||||||||||||| || || |||||||||||||||||||| | Sbjct 1810 GGAAATCCATTCATGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTC 1751 Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || ||||| ||| | ||||| |||||| | || ||| | | ||||| Sbjct 1750 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 1691 Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087 ||| || || ||||| || || || || |||| | ||| ||||| ||| Sbjct 1690 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 1634 Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147 | |||| |||| |||| ||||| || | || | | ||| || ||| | ||| Sbjct 1633 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 1574 Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206 ||||||||| || | || ||||| ||| || ||||| ||| | || || Sbjct 1573 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 1515 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTAC 76264 ||||||| | | | |||||||||||||| || |||| ||| || | | | ||| Sbjct 1514 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-CTTTCTTGGCTCTTCGATTAC 1456 Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 ||||||| ||| |||||||||| | | || || ||||| ||||| || || ||| Sbjct 1455 -CATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCAC 1397 Query 76325 GCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 || | || || |||| || | ||| | | ||| |||||||||| | | Sbjct 1396 GCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACTTACG 1339 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442 | || || || | || | || | ||||| | |||||||||| | || | ||| | | Sbjct 1338 AAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACC 1280 Query 76443 -TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | ||||||||| | ||| || ||||| | | ||| | || |||||| Sbjct 1279 GACCTTTGGGACTGGGATAGCTTGAAGAAATCAATCAAACAACACGGTGTCCGCAACAGT 1220 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 | | | || || |||||||||||| |||| | ||||| | ||| || || ||| Sbjct 1219 TTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGC 1160 Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621 |||||||||||||| | ||||||||| | | | | || || || || || Sbjct 1159 TTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTT 1100 Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 || ||| || |||| || || | || || | ||||| | | |||||| Sbjct 1099 GTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAG 1040 Query 76682 GA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 | | |||| | ||| |||||||| |||||||| || | | || |||| ||| Sbjct 1039 AACCGTATCATCGCTGA----CGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGA 984 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATG 76795 |||||| || ||| || || ||||| | || | ||| | | || | ||| Sbjct 983 CATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATG 926 Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAA 76853 ||||| || |||||| ||| |||| | ||||| | | ||||| | |||| || Sbjct 925 GCCGCTGACCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAG 868 Query 76854 GTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAA 76913 || || ||| |||| | |||| |||||| | | |||||| ||| ||||| | Sbjct 867 ACCCCACAATGGGCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGA 808 Query 76914 CCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964 ||||||||||||| ||||| | | ||| | || ||| |||||||||| Sbjct 807 CCGGAATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596456736488800