Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 233 2e-56
>SEQ14673
Length=3941
Score = 233 bits (258), Expect = 2e-56
Identities = 1180/1851 (64%), Gaps = 61/1851 (3%)
Strand=Plus/Minus
Query 75146 TACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACGGCTCGATGGCATCCTCAT 75204
||||| || |||| ||||| ||| || | || |||| || |||||||| | |
Sbjct 2578 TACTTCGGATTCAAGACCCTCGAGC-GATCGTACCTTCTTCGACTCGATGGAAAAGTTGC 2520
Query 75205 GGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGA 75264
||| ||||| | ||| ||||||| || || | || || ||||| || || |||||
Sbjct 2519 AGAACGTCCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGA 2460
Query 75265 TTCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAA 75323
| | | ||||| ||| || |||||| | | || |||| ||||| | || |
Sbjct 2459 GAGCGCCATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTA 2401
Query 75324 CCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACA 75383
| || ||| |||||||||||| | | ||| | || |||||||| || | | |
Sbjct 2400 CACTTTTCTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGA 2341
Query 75384 AGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGT 75443
|||||||| || | ||||| |||| || || | | ||||| ||||| ||
Sbjct 2340 AGGAGGACAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAA 2281
Query 75444 GGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGG 75503
||||| |||||||| | |||| || | | |||| | | || |
Sbjct 2280 ATGCTGGAGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCG 2221
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| || || ||| | || | || || | || ||||| || || || ||| ||| ||
Sbjct 2220 GTACCAACGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTA 2161
Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATC-GCGGTCTACTTGGAA 75616
| || || | |||| || ||||| ||| ||| || ||||| | ||
Sbjct 2160 GATACGTCGACCAAGGTGGAAACAAGCGTCCT----GGTGCATTTGCAGTCTATCTTGAG 2105
Query 75617 CCATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAG 75676
|| ||||| || ||| | | |||||||| || | ||| ||||| || | |||||
Sbjct 2104 CCTTGGCACGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAA 2045
Query 75677 GCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
| || | ||||| || | || |||||||||| || || ||||||||||| |||
Sbjct 2044 GTCCGCGCCCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTT 1985
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCA---CCAGGTCTCTCCGAC 75793
|| || | | ||| | || | || || ||| | | || || | | ||
Sbjct 1984 GAAAAGAACGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGAT 1928
Query 75794 GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---C 75850
| || || ||||||||||| ||||| | ||||| |||| ||||||| |
Sbjct 1927 GTATATGGCGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGC 1868
Query 75851 AATGCGACTGTACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACT 75910
|| ||| | |||| | ||||| | | |||||| | | || || |||||
Sbjct 1867 AA---GACCATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACC 1811
Query 75911 GGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTG 75970
|||| |||| ||||||||||||||||| || || |||||||||||||||||||| |
Sbjct 1810 GGAAATCCATTCATGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTC 1751
Query 75971 GGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030
|| || || ||||| ||| | ||||| |||||| | || ||| | | |||||
Sbjct 1750 GGCACCATTCGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAA 1691
Query 76031 ACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT--CAATGAA-GAGACT 76087
||| || || ||||| || || || || |||| | ||| ||||| |||
Sbjct 1690 GTCGCTTGCTGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGACATGAATGAG--- 1634
Query 76088 CGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAAC 76147
| |||| |||| |||| ||||| || | || | | ||| || ||| | |||
Sbjct 1633 GGAACTTACGATTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAAC 1574
Query 76148 CGAGTCATTGACAGAAATTTTTATCCCGT-TGAGACTGCGCGAAAGTCTAATATGCGACA 76206
||||||||| || | || ||||| ||| || ||||| ||| | || ||
Sbjct 1573 AAGATCATTGACATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCA 1515
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATT--TTGTGCCGCTAC 76264
||||||| | | | |||||||||||||| || |||| ||| || | | | |||
Sbjct 1514 TCGACCTATCGCTGTCGGTGTTCAAGGTCTTGCCGATG-CTTTCTTGGCTCTTCGATTAC 1456
Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324
||||||| ||| |||||||||| | | || || ||||| ||||| || || |||
Sbjct 1455 -CATTTGAATCACCTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCAC 1397
Query 76325 GCATCCCTGGAGGCG--AGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382
|| | || || |||| || | ||| | | ||| |||||||||| | |
Sbjct 1396 GCTGCTTTGACATCGTCCGTTGAGA--TTGCTAAGGAGTTGGGTACCTATGAGACTTACG 1339
Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGC 76442
| || || || | || | || | ||||| | |||||||||| | || | ||| | |
Sbjct 1338 AAGGCTCACCTGTCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACC 1280
Query 76443 -TCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501
| | ||||||||| | ||| || ||||| | | ||| | || ||||||
Sbjct 1279 GACCTTTGGGACTGGGATAGCTTGAAGAAATCAATCAAACAACACGGTGTCCGCAACAGT 1220
Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561
| | | || || |||||||||||| |||| | ||||| | ||| || || |||
Sbjct 1219 TTGCTCGTTGCTCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGC 1160
Query 76562 TTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATT 76621
|||||||||||||| | ||||||||| | | | | || || || || ||
Sbjct 1159 TTTGAACCATACACTTCTAACATCTACTCTCGTCGTGTCTTGGCTGGAGAATTCCAAGTT 1100
Query 76622 GTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681
|| ||| || |||| || || | || || | ||||| | | ||||||
Sbjct 1099 GTTAACCCATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAG 1040
Query 76682 GA---TCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737
| | |||| | ||| |||||||| |||||||| || | | || |||| |||
Sbjct 1039 AACCGTATCATCGCTGA----CGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGA 984
Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAA--TCAAGATGAAAGATGTCATTGACATG 76795
|||||| || ||| || || ||||| | || | ||| | | || | |||
Sbjct 983 CATCAAGGCACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATG 926
Query 76796 GCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAA 76853
||||| || |||||| ||| |||| | ||||| | | ||||| | |||| ||
Sbjct 925 GCCGCTGACCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAG 868
Query 76854 GTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAA 76913
|| || ||| |||| | |||| |||||| | | |||||| ||| ||||| |
Sbjct 867 ACCCCACAATGGGCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGA 808
Query 76914 CCGGAATGTACTATCTCCGATCAAAGGCGAAAGCCCGACCAATTCAGTTCA 76964
||||||||||||| ||||| | | ||| | || ||| ||||||||||
Sbjct 807 CCGGAATGTACTACCTCCGTACCATGGCCGCATCCGCACCTATTCAGTTCA 757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596456736488800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |