Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value SEQ14127 86.0 9e-12 >SEQ14127 Length=21342 Score = 86.0 bits (94), Expect = 9e-12 Identities = 191/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 18422 TCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCT 18481 || || || || || ||||| | | ||| || |||| || || || | ||||| Sbjct 14329 TCCTTGATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATATTCTCCATCATA 14270 Query 18482 ATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCT 18541 || || |||| || || | | ||||||||| ||||| || | | || | || Sbjct 14269 ATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCG 14210 Query 18542 ACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATG 18601 || | ||||| || ||||| ||||| | | |||||| ||||| | || | ||| Sbjct 14209 ACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATG 14150 Query 18602 AAATGTTTTTCATTATCCTTGAGATTGTT---CCATTCATCTATATCTTTTGATAGATCA 18658 |||| |||| ||| ||||| ||||| ||| || | | || ||||| | || Sbjct 14149 AAATAGCGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCG 14090 Query 18659 ACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 | ||||| | |||||| ||||||| ||||||| ||||||||||| Sbjct 14089 ATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTT 14044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731733538966000