Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 159 1e-33 SEQ14127 113 1e-19 seq1278 100 8e-16 seq281 100 8e-16 seq10 86.0 2e-11 >SEQ14673 Length=3941 Score = 159 bits (176), Expect = 1e-33 Identities = 571/880 (65%), Gaps = 17/880 (2%) Strand=Plus/Plus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 |||||| ||||| || ||||| || || || |||||||| | ||||| ||||| Sbjct 1706 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 1765 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 | || | || || ||||||||||| || ||| |||| |||| ||||| | || || Sbjct 1766 ACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 1825 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || ||||| ||| || | |||| || || |||| ||| |||||| Sbjct 1826 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 1885 Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867 |||||| | ||||| | ||| ||| | || || || || |||| || ||||| Sbjct 1886 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 1943 Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925 || | || |||||| | || | |||| || | || ||||||| ||| || | Sbjct 1944 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 2001 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984 ||| ||| | ||||||||||| || | | | ||| || || | ||| || Sbjct 2002 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCATGG 2060 Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044 ||||| || || || | ||| || || ||| | || ||||| ||||| | ||| Sbjct 2061 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2120 Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 || |||| | |||| ||||| || || || || | |||||| || ||||| || Sbjct 2121 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 2180 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159 | |||||| || | || || ||||| | || ||||| || |||| ||||| ||||| Sbjct 2181 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 2238 Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219 | || | | ||||| | || |||||||| || | |||||| || ||| | Sbjct 2239 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 2298 Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279 || ||| | |||| ||||||| |||||| || || | ||| | || ||| Sbjct 2299 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 2358 Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339 | || | |||| | ||||||| |||||| ||| |||||||| | || || | | Sbjct 2359 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 2418 Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399 | || || || |||||| | ||| ||||| | |||||| || ||||||| Sbjct 2419 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAA 2478 Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459 ||| | | || | ||| ||| || || ||||| ||| ||| |||||| | || Sbjct 2479 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTC 2538 Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 | |||||||| | || || || || || || ||||| || Sbjct 2539 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 2578 >SEQ14127 Length=21342 Score = 113 bits (124), Expect = 1e-19 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 ||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | | Sbjct 14424 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 14483 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||||| ||||| ||||||||||||| || |||||||| || |||||||| | | Sbjct 14484 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 14543 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||||| || ||||| || |||||||| | | |||| || ||| || || | Sbjct 14544 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 14603 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 | || || || | || || | || || ||||| || || Sbjct 14604 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 14643 >seq1278 Length=5674 Score = 100 bits (110), Expect = 8e-16 Identities = 115/152 (76%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || |||||||||||| |||||||| || || || ||||| | |||||| | Sbjct 3605 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 3546 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955 || | | |||||| ||||| |||| || | ||| |||| | || ||||||||||| Sbjct 3545 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 3489 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||||||| |||||||||||||| Sbjct 3488 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 3457 >seq281 Length=11394 Score = 100 bits (110), Expect = 8e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 || |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || | Sbjct 3992 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 3933 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 || || | || | || | ||||||||||| ||| || ||||||| || ||||| ||| Sbjct 3932 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 3873 Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 | || || |||| ||||| || | | ||||| ||| |||| | |||||||| | Sbjct 3872 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 3815 Query 289205 TCTTACCTGTTCC 289217 | ||||| || || Sbjct 3814 TTTTACCGGTACC 3802 >seq10 Length=14555 Score = 86.0 bits (94), Expect = 2e-11 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||| | | ||||| | |||||| ||||| ||||||||| | || || || || Sbjct 8517 TCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGACTGCA 8458 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 ||||| || | ||| |||||||| |||| || |||||||| | || || || Sbjct 8457 GTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGGGGTAAGA 8398 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | | || ||||||||||||| | || || || || | || ||| || Sbjct 8397 CCTCTAAGATATGAATTCTCAACGAAACCTCTCGATTCAGGAGAGTAATCATCCTTAGTG 8338 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || | || |||| | | ||| | ||||||||||| || || || |||| Sbjct 8337 AAATGCGGTAAAGTTCTGTATTTGAAACCGAACGGGATACGCTTACCCTCGACAGACTGC 8278 Query 302812 TGTCCCA 302818 || |||| Sbjct 8277 TGACCCA 8271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471532189270495