Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 159 1e-33
SEQ14127 113 1e-19
seq1278 100 8e-16
seq281 100 8e-16
seq10 86.0 2e-11
>SEQ14673
Length=3941
Score = 159 bits (176), Expect = 1e-33
Identities = 571/880 (65%), Gaps = 17/880 (2%)
Strand=Plus/Plus
Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689
|||||| ||||| || ||||| || || || |||||||| | ||||| |||||
Sbjct 1706 GTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTT 1765
Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749
| || | || || ||||||||||| || ||| |||| |||| ||||| | || ||
Sbjct 1766 ACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGC 1825
Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809
|| ||||| ||| || | |||| || || |||| ||| ||||||
Sbjct 1826 CTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTT 1885
Query 155810 CTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGG 155867
|||||| | ||||| | ||| ||| | || || || || |||| || |||||
Sbjct 1886 CTCATAACTCTCATAGAGAGC-TTC-AAACTCGTCGCCATATACATCAGCCAACCCAGGA 1943
Query 155868 CACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATA 155925
|| | || |||||| | || | |||| || | || ||||||| ||| || |
Sbjct 1944 CATTCATTGGGGCACATTAGTGTCCAATCCGCGTT--CTTTTCAACACGCTTCATGAAGA 2001
Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGAC-TCCTCATCGCCGTGA 155984
||| ||| | ||||||||||| || | | | ||| || || | ||| ||
Sbjct 2002 GATCCGGAATCCACAAGGCATAGAAAAGATCAC-GGGCGCGGACTTCTTCCTTGCCATGG 2060
Query 155985 TTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCA 156044
||||| || || || | ||| || || ||| | || ||||| ||||| | |||
Sbjct 2061 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2120
Query 156045 AAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
|| |||| | |||| ||||| || || || || | |||||| || ||||| ||
Sbjct 2121 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 2180
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGA-ATATGCGAACCAG 156159
| |||||| || | || || ||||| | || ||||| || |||| ||||| |||||
Sbjct 2181 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGC--ACCAG 2238
Query 156160 ATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGC 156219
| || | | ||||| | || |||||||| || | |||||| || ||| |
Sbjct 2239 TGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCAC 2298
Query 156220 ATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGC 156279
|| ||| | |||| ||||||| |||||| || || | ||| | || |||
Sbjct 2299 ATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGC 2358
Query 156280 ACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAA 156339
| || | |||| | ||||||| |||||| ||| |||||||| | || || | |
Sbjct 2359 ATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGA 2418
Query 156340 AATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAA 156399
| || || || |||||| | ||| ||||| | |||||| || |||||||
Sbjct 2419 AGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAA 2478
Query 156400 TACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTC 156459
||| | | || | ||| ||| || || ||||| ||| ||| |||||| | ||
Sbjct 2479 TACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTC 2538
Query 156460 GCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
| |||||||| | || || || || || || ||||| ||
Sbjct 2539 GAAGAAGGTACGATCGCTCGAGGGTCTTGAATCCGAAGTA 2578
>SEQ14127
Length=21342
Score = 113 bits (124), Expect = 1e-19
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496
||||||| ||||| |||||| | ||||||||| | | |||||| || ||||| | |
Sbjct 14424 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 14483
Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556
|||||| ||||| ||||||||||||| || |||||||| || |||||||| | |
Sbjct 14484 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 14543
Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616
|| ||||| || ||||| || |||||||| | | |||| || ||| || || |
Sbjct 14544 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 14603
Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| || || || | || || | || || ||||| || ||
Sbjct 14604 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 14643
>seq1278
Length=5674
Score = 100 bits (110), Expect = 8e-16
Identities = 115/152 (76%), Gaps = 6/152 (4%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || |||||||||||| |||||||| || || || ||||| | |||||| |
Sbjct 3605 TGTGCAATAGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATAAGGTCGGGAACAATG 3546
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGT--TTCCAATAGTTCCCTTT 251955
|| | | |||||| ||||| |||| || | ||| |||| | || |||||||||||
Sbjct 3545 CCTTGACTAGTGAATGGCATGTCCTGTTGC---ATATATGTGATACCGATAGTTCCCTTC 3489
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||||||| ||||||||||||||
Sbjct 3488 TGTCCGTGACGAGAAGCAAACTTATCACCAAT 3457
>seq281
Length=11394
Score = 100 bits (110), Expect = 8e-16
Identities = 140/193 (73%), Gaps = 4/193 (2%)
Strand=Plus/Minus
Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086
|| |||||||| |||||||| ||||||||||| | ||| |||| | | | ||| || |
Sbjct 3992 TTTCCAACAGCGTCAATTTCATCAATGAAAATGATACATGGAGTACTCTTTCTTGCCGTG 3933
Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146
|| || | || | || | ||||||||||| ||| || ||||||| || ||||| |||
Sbjct 3932 GCGAAAAGATCACGGACTCTGGATGCTCCAACACCTACGAACATTTCGACGAATTCCGAA 3873
Query 289147 --GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204
| || || |||| ||||| || | | ||||| ||| |||| | |||||||| |
Sbjct 3872 CCACTGACAC-TGAA-GAATGGCACCTGGGACTCGCCAGCTGTTGCCTTTGCCAGAAGCG 3815
Query 289205 TCTTACCTGTTCC 289217
| ||||| || ||
Sbjct 3814 TTTTACCGGTACC 3802
>seq10
Length=14555
Score = 86.0 bits (94), Expect = 2e-11
Identities = 167/247 (68%), Gaps = 0/247 (0%)
Strand=Plus/Minus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||| | | ||||| | |||||| ||||| ||||||||| | || || || ||
Sbjct 8517 TCTTCAAGAGCCTTGACAAGACGACGTTGAATGTAACCAGTTTCTGCGGTCTTGACTGCA 8458
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691
||||| || | ||| |||||||| |||| || |||||||| | || || ||
Sbjct 8457 GTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGAATTCAGTGGGGGTAAGA 8398
Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751
|| | || | | || ||||||||||||| | || || || || | || ||| ||
Sbjct 8397 CCTCTAAGATATGAATTCTCAACGAAACCTCTCGATTCAGGAGAGTAATCATCCTTAGTG 8338
Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811
|| || || | || |||| | | ||| | ||||||||||| || || || ||||
Sbjct 8337 AAATGCGGTAAAGTTCTGTATTTGAAACCGAACGGGATACGCTTACCCTCGACAGACTGC 8278
Query 302812 TGTCCCA 302818
|| ||||
Sbjct 8277 TGACCCA 8271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471532189270495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |