Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value SEQ14749 111 2e-18 seq8535 109 7e-18 SEQ14127 93.3 5e-13 >SEQ14749 Length=4074 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| ||||| |||| ||||| | || |||||| | || ||||| Sbjct 2359 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 2418 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 2419 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 2467 >seq8535 Length=2522 Score = 109 bits (120), Expect = 7e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190 ||||||| ||||| || ||||| ||| | ||||||||| | || || || || Sbjct 1403 GTGGGACCTAAAGTTTATGGAAGTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTGC 1344 Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 |||||||||||||||||| ||| |||||| || | |||| | ||| ||| | ||||| Sbjct 1343 TAACTACCTCGACATCAAGGGTCTTCTCGATTTTAGCTGCACGGTTGTTGCCTATATGAT 1284 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||| |||||| | || || || ||||| ||||| || |||||| Sbjct 1283 CAAAGGCAAGACTCCAGAAGAAATCCGAAAGACATTCAACATC 1241 >SEQ14127 Length=21342 Score = 93.3 bits (102), Expect = 5e-13 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| |||||||| | || ||||| Sbjct 14940 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 14881 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| ||| || || | | Sbjct 14880 TTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGCAACT 14821 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || || |||||||| ||||||||||| || ||| | | ||||||||||| | Sbjct 14820 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 14761 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||| ||| || || | ||||||||||| ||||| |||| Sbjct 14760 AGTGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATG 14701 Query 868931 A 868931 | Sbjct 14700 A 14700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6105897151022795