Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14749 111 2e-18
seq8535 109 7e-18
SEQ14127 93.3 5e-13
>SEQ14749
Length=4074
Score = 111 bits (122), Expect = 2e-18
Identities = 90/109 (83%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| |||||||||||||| ||||| |||| ||||| | || |||||| | || |||||
Sbjct 2359 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 2418
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| || || || ||||| ||||| ||||||||||
Sbjct 2419 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 2467
>seq8535
Length=2522
Score = 109 bits (120), Expect = 7e-18
Identities = 122/163 (75%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 1592131 GTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGC 1592190
||||||| ||||| || ||||| ||| | ||||||||| | || || || ||
Sbjct 1403 GTGGGACCTAAAGTTTATGGAAGTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTGC 1344
Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250
|||||||||||||||||| ||| |||||| || | |||| | ||| ||| | |||||
Sbjct 1343 TAACTACCTCGACATCAAGGGTCTTCTCGATTTTAGCTGCACGGTTGTTGCCTATATGAT 1284
Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||| |||||| | || || || ||||| ||||| || ||||||
Sbjct 1283 CAAAGGCAAGACTCCAGAAGAAATCCGAAAGACATTCAACATC 1241
>SEQ14127
Length=21342
Score = 93.3 bits (102), Expect = 5e-13
Identities = 165/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || | | |||||| ||||| |||||||| | || |||||
Sbjct 14940 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 14881
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| ||| || || | |
Sbjct 14880 TTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACCAAGAGCAACT 14821
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || || |||||||| ||||||||||| || ||| | | ||||||||||| |
Sbjct 14820 AGGAGACGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGA 14761
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| || || | ||||||||||| ||||| ||||
Sbjct 14760 AGTGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATG 14701
Query 868931 A 868931
|
Sbjct 14700 A 14700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105897151022795
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |