Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value SEQ14749 111 2e-18 seq8535 87.8 3e-11 >SEQ14749 Length=4074 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || |||||||||||||| ||||| | |||||||| | || ||||||||||| ||||| Sbjct 2359 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 2418 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 2419 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 2467 >seq8535 Length=2522 Score = 87.8 bits (96), Expect = 3e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2035629 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGG 2035688 ||||||||| | || || || || |||||||||||||||||| || |||||||| | Sbjct 1366 CTCTTTGAGCTTATTCTGGCTGCTAACTACCTCGACATCAAGGGTCTTCTCGATTTTAGC 1307 Query 2035689 TGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTT 2035748 |||| | || ||| | | ||||| |||||| | || || || ||||| ||||| || Sbjct 1306 TGCACGGTTGTTGCCTATATGATCAAAGGCAAGACTCCAGAAGAAATCCGAAAGACATTC 1247 Query 2035749 AACATC 2035754 |||||| Sbjct 1246 AACATC 1241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914636421019265