Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1428 147 2e-29 SEQ14217 105 5e-17 seq1513 87.8 1e-11 seq10 87.8 1e-11 >seq1428 Length=2374 Score = 147 bits (162), Expect = 2e-29 Identities = 580/899 (65%), Gaps = 15/899 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| | ||||| |||||||| | ||| || ||||| || || || || || Sbjct 1001 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 1060 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 1061 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1120 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 ||| ||| |||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 1121 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1180 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || ||| ||| || || |||||| || ||||| | | ||| | |||||| Sbjct 1181 GTAGAGAAGACTTCGGACTTCTTGGTAGGAATAGTGGTGTTGCGGTGAATGAGCTTGGTC 1240 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || |||||||| || || | ||||||||| | || | |||||| | || | || Sbjct 1241 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1300 Query 281726 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || | || || || ||| | |||| ||| ||||| || || | |||||||| Sbjct 1301 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 1360 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 1361 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1420 Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 1421 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1477 Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 1478 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 1535 Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017 || || || | ||| |||||||| ||||| ||| | ||| | || | | Sbjct 1536 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1595 Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 | || || || ||||| | ||| || | ||| || | || || | || ||||| || | Sbjct 1596 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 1655 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 1656 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1714 Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 1715 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1774 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 || || ||||| ||||| | ||| | || | || | | |||| ||| | || || Sbjct 1775 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 1834 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | || ||| |||| |||||| |||||| ||||| | ||| || || || || || Sbjct 1835 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 1893 >SEQ14217 Length=14499 Score = 105 bits (116), Expect = 5e-17 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 ||||||| | || ||| || || || || |||| || |||||||| ||||| |||| | Sbjct 6831 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6890 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 ||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| | Sbjct 6891 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6950 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||| || || ||||||||||||| ||| |||| Sbjct 6951 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6983 >seq1513 Length=35742 Score = 87.8 bits (96), Expect = 1e-11 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747 |||||| || || || |||| || | ||||| || | |||||||||||||| | || Sbjct 34784 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 34725 Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807 | |||| || || || | |||||||| ||||| | || | ||||| || || | Sbjct 34724 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 34665 Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867 | ||| |||||||| || |||||| ||||| || ||| | || ||||| | ||| Sbjct 34664 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 34605 Query 282868 AATACCAATAGCAATTTT 282885 ||||| || | ||||| Sbjct 34604 GATACCGATGACTATTTT 34587 >seq10 Length=14555 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191 |||||| |||||||| | |||||||||||||||||| | || |||| || | || || Sbjct 8410 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 8469 Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251 || || |||||||| |||||| | ||||||||| ||||||||| | | | Sbjct 8470 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTCATGGCGAA 8529 Query 435252 ATATGATGGTACAGTGAGAAA 435272 |||||| ||||| || |||| Sbjct 8530 ATATGACGGTACGGTCCGAAA 8550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739887335460510