Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1428 147 2e-29
SEQ14217 105 5e-17
seq1513 87.8 1e-11
seq10 87.8 1e-11
>seq1428
Length=2374
Score = 147 bits (162), Expect = 2e-29
Identities = 580/899 (65%), Gaps = 15/899 (2%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| | ||||| |||||||| | ||| || ||||| || || || || ||
Sbjct 1001 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATCTGTGGAACA 1060
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||||||||| || || | | || |||| ||| || || || ||
Sbjct 1061 CCACGAGGAGCAGGTGGAATACCAGTGAGCTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1120
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
||| ||| |||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 1121 GTGCGCGTTCTTTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1180
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || ||| ||| || || |||||| || ||||| | | ||| | ||||||
Sbjct 1181 GTAGAGAAGACTTCGGACTTCTTGGTAGGAATAGTGGTGTTGCGGTGAATGAGCTTGGTC 1240
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| |||||||| || || | ||||||||| | || | |||||| | || | ||
Sbjct 1241 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1300
Query 281726 T--TTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || | || || || ||| | |||| ||| ||||| || || | ||||||||
Sbjct 1301 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAAAGGATAGCAGCCTGGACGGCAGCACCG 1360
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 1361 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1420
Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 1421 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1477
Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 1478 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTG-G 1535
Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017
|| || || | ||| |||||||| ||||| ||| | ||| | || | |
Sbjct 1536 TAGATCGGAAGAGGTCCTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1595
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
| || || || ||||| | ||| || | ||| || | || || | || ||||| || |
Sbjct 1596 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAAGAGAGGG 1655
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 1656 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1714
Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 1715 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1774
Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256
|| || ||||| ||||| | ||| | || | || | | |||| ||| | || ||
Sbjct 1775 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCGAAGATACCCTCC 1834
Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|| | || ||| |||| |||||| |||||| ||||| | ||| || || || || ||
Sbjct 1835 TCGATAGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTT 1893
>SEQ14217
Length=14499
Score = 105 bits (116), Expect = 5e-17
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 282321 CTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380
||||||| | || ||| || || || || |||| || |||||||| ||||| |||| |
Sbjct 6831 CTTTGTCCTCGTCTTTCTCGAGGCCGTAGGCAAGTGCGGCAGCAGTAGGTTCGTTAACCA 6890
Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440
||| | ||| || | ||| || ||| ||||| ||||| || || || | |||||| |
Sbjct 6891 CTCTGAGAACGTTCAAACCGGCGATTTGGCCTGCGTCTTTTGTTGCCTGGCGTTGTGAGT 6950
Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473
|||| || || ||||||||||||| ||| ||||
Sbjct 6951 CGTTGAAGTAGGCAGGAACAGTAACAACAGCAT 6983
>seq1513
Length=35742
Score = 87.8 bits (96), Expect = 1e-11
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|||||| || || || |||| || | ||||| || | |||||||||||||| | ||
Sbjct 34784 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 34725
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
| |||| || || || | |||||||| ||||| | || | ||||| || || |
Sbjct 34724 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 34665
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
| ||| |||||||| || |||||| ||||| || ||| | || ||||| | |||
Sbjct 34664 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 34605
Query 282868 AATACCAATAGCAATTTT 282885
||||| || | |||||
Sbjct 34604 GATACCGATGACTATTTT 34587
>seq10
Length=14555
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191
|||||| |||||||| | |||||||||||||||||| | || |||| || | || ||
Sbjct 8410 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 8469
Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251
|| || |||||||| |||||| | ||||||||| ||||||||| | | |
Sbjct 8470 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAGGCTCTTGAAGATGTCATGGCGAA 8529
Query 435252 ATATGATGGTACAGTGAGAAA 435272
|||||| ||||| || ||||
Sbjct 8530 ATATGACGGTACGGTCCGAAA 8550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739887335460510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |