Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 179 9e-40
SEQ14127 122 2e-22
>SEQ14673
Length=3941
Score = 179 bits (198), Expect = 9e-40
Identities = 339/493 (69%), Gaps = 7/493 (1%)
Strand=Plus/Minus
Query 110552 TATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGG 110611
|||||| |||||||||||| | || || | |||| | || |||||||| |||||||
Sbjct 2330 TATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGG 2271
Query 110612 AATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGG 110671
|||||| | || |||| || || | | || ||| | ||||| | || ||
Sbjct 2270 TATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGG 2211
Query 110672 TG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGA 110730
| || |||| | | | || || ||| || |||| |||||| ||||||| | ||| ||
Sbjct 2210 TAACTCCAACGGCA-TCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCG 2152
Query 110731 ATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAG 110787
| |||||||| || | | ||| ||||||| ||||||| || |||||||| |||
Sbjct 2151 ACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAG 2092
Query 110788 ATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTG 110847
|| | || || ||| | || || || || || || || |||||| | || ||||
Sbjct 2091 ATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTG 2032
Query 110848 ATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GC 110906
|| | || ||||| |||||||| | ||| | |||||||| |||||| || | || | |
Sbjct 2031 ATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGG 1972
Query 110907 ATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAG 110966
|| ||| | || ||||| || || | |||||| | ||||||||||||| | |||
Sbjct 1971 AT-TGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAG 1913
Query 110967 TTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCT 111026
||||||| || || || | ||||| || ||||| | |||||| || |||
Sbjct 1912 TTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCC 1853
Query 111027 CAAGAACTTTGGT 111039
||| | |||||||
Sbjct 1852 CAAAAGCTTTGGT 1840
>SEQ14127
Length=21342
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846
||||| ||||| |||||||| || |||||| | | |||||||||||| | | |||
Sbjct 14424 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 14483
Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906
||| || | || || ||||||||| |||||| || || ||||| || | |
Sbjct 14484 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 14543
Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966
|| | ||||||| ||||| ||||||||||| |||||| |||| ||| | || ||||||
Sbjct 14544 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 14603
Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006
| ||||||| | ||||||| | ||||| || || ||
Sbjct 14604 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 14643
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186582656599735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |