Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 179 9e-40 SEQ14127 122 2e-22 >SEQ14673 Length=3941 Score = 179 bits (198), Expect = 9e-40 Identities = 339/493 (69%), Gaps = 7/493 (1%) Strand=Plus/Minus Query 110552 TATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGG 110611 |||||| |||||||||||| | || || | |||| | || |||||||| ||||||| Sbjct 2330 TATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGG 2271 Query 110612 AATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGG 110671 |||||| | || |||| || || | | || ||| | ||||| | || || Sbjct 2270 TATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGG 2211 Query 110672 TG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGA 110730 | || |||| | | | || || ||| || |||| |||||| ||||||| | ||| || Sbjct 2210 TAACTCCAACGGCA-TCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCG 2152 Query 110731 ATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAG 110787 | |||||||| || | | ||| ||||||| ||||||| || |||||||| ||| Sbjct 2151 ACCAAGGTGGAAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAG 2092 Query 110788 ATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTG 110847 || | || || ||| | || || || || || || || |||||| | || |||| Sbjct 2091 ATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTG 2032 Query 110848 ATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GC 110906 || | || ||||| |||||||| | ||| | |||||||| |||||| || | || | | Sbjct 2031 ATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGG 1972 Query 110907 ATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAG 110966 || ||| | || ||||| || || | |||||| | ||||||||||||| | ||| Sbjct 1971 AT-TGGACACTAATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAG 1913 Query 110967 TTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCT 111026 ||||||| || || || | ||||| || ||||| | |||||| || ||| Sbjct 1912 TTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAGGTCGCAAGACCATCAAAGCC 1853 Query 111027 CAAGAACTTTGGT 111039 ||| | ||||||| Sbjct 1852 CAAAAGCTTTGGT 1840 >SEQ14127 Length=21342 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 ||||| ||||| |||||||| || |||||| | | |||||||||||| | | ||| Sbjct 14424 TTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAACTCTA 14483 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || | || || ||||||||| |||||| || || ||||| || | | Sbjct 14484 CCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCAT 14543 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 || | ||||||| ||||| ||||||||||| |||||| |||| ||| | || |||||| Sbjct 14544 TCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATG 14603 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | ||||||| | ||||||| | ||||| || || || Sbjct 14604 AGCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGC 14643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186582656599735