Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 107 1e-18 seq6733 102 5e-17 >SEQ14665 Length=6019 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | ||||||||| || || ||||||||||| || || || | | Sbjct 2897 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 2838 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| ||||| ||||| || || | || | ||| || || Sbjct 2837 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 2778 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || || | |||| ||| | ||| || |||||||| || | || | Sbjct 2777 GTCTTGAATCTT-TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 2719 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || || |||||||||||| Sbjct 2718 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 2681 >seq6733 Length=2883 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| || ||||| |||||||| ||||| Sbjct 1574 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 1633 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||| || ||||| || |||| ||| |||||||| | || Sbjct 1634 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 1693 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| | ||| || ||||| || Sbjct 1694 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTATCAGAGGATTCAAC 1752 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 1753 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328643367979200