Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14665 107 1e-18
seq6733 102 5e-17
>SEQ14665
Length=6019
Score = 107 bits (118), Expect = 1e-18
Identities = 156/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593
||| | |||||| || | ||||||||| || || ||||||||||| || || || | |
Sbjct 2897 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 2838
Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653
|| ||||| || ||||| ||||| ||||| ||||| || || | || | ||| || ||
Sbjct 2837 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 2778
Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712
||| ||| || || | |||| ||| | ||| || |||||||| || | || |
Sbjct 2777 GTCTTGAATCTT-TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 2719
Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || || || || || || || || ||||||||||||
Sbjct 2718 TGGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATA 2681
>seq6733
Length=2883
Score = 102 bits (112), Expect = 5e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||| | | ||| | ||||| || |||||| || ||||| |||||||| |||||
Sbjct 1574 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 1633
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| |||||| | || || | ||| || ||||| || |||| ||| |||||||| | ||
Sbjct 1634 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 1693
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| || || ||||| || || || | ||| ||| | ||| || ||||| ||
Sbjct 1694 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTATCAGAGGATTCAAC 1752
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| |||||||| || | ||||| || |||||||||||
Sbjct 1753 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328643367979200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |