Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value SEQ14665 132 5e-26 seq6733 129 6e-25 >SEQ14665 Length=6019 Score = 132 bits (146), Expect = 5e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || |||||||| ||||| ||||||||||||| | |||| || Sbjct 2514 AGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGA 2455 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| ||||| || || || |||||||| || ||||| || || ||||| || Sbjct 2454 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCC 2395 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||||||||| || || |||||||| Sbjct 2394 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTG 2335 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| || || || | ||| || |||| Sbjct 2334 ATGGTCTTGCCAGTGAGAGTCTTGACGA 2307 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 ||||| ||||||||||| || || || || | || || | ||| || || ||||| Sbjct 2872 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAA 2814 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 ||||| ||||| || || || || || || || || |||||||| ||| ||||| Sbjct 2813 GATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATT 2754 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||| | || || ||||||||||| || | |||||||| || ||||| ||||| || || Sbjct 2753 GTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTGAC 2694 Query 134702 GAAAATTTGCAT 134713 ||| || ||||| Sbjct 2693 GAAGATCTGCAT 2682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || |||||||||||||| ||||||| | ||| | || || Sbjct 2221 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGGTACGGCCATCTTCA 2162 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||||||||| || ||||| ||||| || || || || || || || || || ||| Sbjct 2161 AGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 2102 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || ||| || || || ||||| || ||||| || Sbjct 2101 ATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 2042 Query 134685 CCGGT 134689 ||||| Sbjct 2041 CCGGT 2037 >seq6733 Length=2883 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || |||||||||||||| |||||||||||| || |||| | || ||||| || Sbjct 1597 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 1656 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| ||| |||||||| || || || || || || || || || || Sbjct 1657 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 1716 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || || || ||||| || ||||| || ||||||||||| || Sbjct 1717 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 1776 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || ||||| Sbjct 1777 GAGGGTTTTGACGAAGATCTGCAT 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505302784940200