Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 250 3e-61 SEQ14127 102 1e-16 >SEQ14673 Length=3941 Score = 250 bits (276), Expect = 3e-61 Identities = 1141/1780 (64%), Gaps = 41/1780 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| |||| |||||||| | ||||| || |||||||| ||||| || ||| Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| || ||||||||| || | ||| | || || || Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| ||||| || || | || || || | || || ||||||| | | Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| | Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || ||||| || | || || ||||| || | || | Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || ||| | || | | | | || || || ||||| | ||| ||||| ||| Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | ||||| ||| || ||| || |||||||| | | || || || Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175 Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 |||||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234 Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | ||||| | |||| || | | ||| |||||||| || | ||| ||| Sbjct 1235 GTGTTGTTTGATTGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||||||||| || || || || ||| || | || || ||||| | Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 1353 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026 || || | ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 1354 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1411 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG-- 69083 ||| || | | ||||| | |||| ||||| | || ||||| |||| || || Sbjct 1412 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 1469 Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143 || ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| | Sbjct 1470 AAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 1527 Query 69144 ACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGA 69202 ||||| | | ||||| | || || || || || || || || || || | |||| || Sbjct 1528 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 1587 Query 69203 CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CA 69258 | || |||| | || || | || || | ||||| | ||| || | | || Sbjct 1588 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 1647 Query 69259 AACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCAT 69316 | || || || || | || || | ||||| || || |||| | | | Sbjct 1648 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 1707 Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376 ||| | || ||||| || | ||| | || || || || || | || |||| Sbjct 1708 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTAC 1767 Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436 |||| || || || || ||||||||||| || || ||| | || || || | |||| | Sbjct 1768 TCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCT 1827 Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTT 69493 ||| ||| || | ||||| || || || ||||||| || || | || | Sbjct 1828 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCT 1884 Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553 | ||||| ||| || ||| || || || || | |||||| |||| ||||||| Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 1944 Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATA 69610 ||||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || | Sbjct 1945 ATTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGA 2001 Query 69611 GATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 |||| |||||||| | || ||| || ||||| | || | |||||| || || Sbjct 2002 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGG 2060 Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729 || ||| || || || ||||| | || ||| | ||||| || || ||||| | || Sbjct 2061 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2120 Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789 | | || || || || ||||| || || || | |||||| |||||||| || | ||| Sbjct 2121 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 2180 Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849 | ||||| || | || || || || ||||| || || || | || || || | Sbjct 2181 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 2240 Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909 || || || | ||| ||||| || ||||| || |||||||||| | |||||| Sbjct 2241 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 2300 Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969 || | || ||||| ||||| || || || || || |||| | || || || || Sbjct 2301 GTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCAT 2360 Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || | ||| ||| || || || || | |||||| || ||||| ||||| Sbjct 2361 GATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 2420 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 |||| | || | || ||||| || ||||| || || ||||| ||| | ||||| Sbjct 2421 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGAAT 2479 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || | || |||||||| | ||| || || || |||||| Sbjct 2480 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 2519 >SEQ14127 Length=21342 Score = 102 bits (112), Expect = 1e-16 Identities = 303/461 (66%), Gaps = 16/461 (3%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| |||||||| | |||||||| || || || |||||| | Sbjct 14950 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 14891 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttA-- 39427 | || || || |||||||| || || || || | | || || || | ||| Sbjct 14890 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACC 14831 Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTC 39486 || || | || | | ||| || || || || |||||| ||||||| ||| Sbjct 14830 AAGAGCAACTAGGAGA-----CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTC 14776 Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546 | ||||| || | ||| | || |||||||| || | || || | |||||| || Sbjct 14775 GCG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTC 14717 Query 39547 TACGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGT 39604 || |||||||| || | || || || ||| | || || | ||| || || Sbjct 14716 GACAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGG 14659 Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664 || | | ||| |||||||| ||| || || ||||| | || | || || Sbjct 14658 GAGAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTG 14599 Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724 || || ||||| |||| ||| | |||||||| |||||||| || || | ||| || ||| Sbjct 14598 GAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGAT 14539 Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||| ||||||||||| || || || ||||| ||||| || Sbjct 14538 CCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 14498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686778845441400