Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 250 3e-61
SEQ14127 102 1e-16
>SEQ14673
Length=3941
Score = 250 bits (276), Expect = 3e-61
Identities = 1141/1780 (64%), Gaps = 41/1780 (2%)
Strand=Plus/Plus
Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433
|| |||||||| |||| |||||||| | ||||| || |||||||| ||||| || |||
Sbjct 756 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 815
Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493
|| | |||| || ||||||||| || | ||| | || || ||
Sbjct 816 CCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 875
Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553
||||| ||||| ||||| || || | || || || | || || ||||||| | |
Sbjct 876 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAACA 935
Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613
|| | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| |
Sbjct 936 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 995
Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670
| | | |||||||| || ||||| || | || || ||||| || | || |
Sbjct 996 TTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGAC 1055
Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730
|| ||| | || | | | | || || || ||||| | ||| ||||| |||
Sbjct 1056 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 1115
Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790
| || || | ||||| ||| || ||| || |||||||| | | || || ||
Sbjct 1116 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 1175
Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849
|||||||||| || || || | ||||||||||| || || | ||||| || | | |||
Sbjct 1176 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 1234
Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908
||| | ||||| | |||| || | | ||| |||||||| || | ||| |||
Sbjct 1235 GTGTTGTTTGATTGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 1293
Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968
||| | ||||||||| || || || || ||| || | || || ||||| |
Sbjct 1294 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGG 1353
Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026
|| || | ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 1354 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 1411
Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAG-- 69083
||| || | | ||||| | |||| ||||| | || ||||| |||| || ||
Sbjct 1412 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 1469
Query 69084 AATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGA 69143
|| ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| |
Sbjct 1470 AAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 1527
Query 69144 ACTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGA 69202
||||| | | ||||| | || || || || || || || || || || | |||| ||
Sbjct 1528 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 1587
Query 69203 CTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CA 69258
| || |||| | || || | || || | ||||| | ||| || | | ||
Sbjct 1588 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 1647
Query 69259 AACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCAT 69316
| || || || || | || || | ||||| || || |||| | | |
Sbjct 1648 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 1707
Query 69317 ATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTAC 69376
||| | || ||||| || | ||| | || || || || || | || ||||
Sbjct 1708 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTAC 1767
Query 69377 TCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATT 69436
|||| || || || || ||||||||||| || || ||| | || || || | |||| |
Sbjct 1768 TCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCT 1827
Query 69437 CGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTT 69493
||| ||| || | ||||| || || || ||||||| || || | || |
Sbjct 1828 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCT 1884
Query 69494 TTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGAC 69553
| ||||| ||| || ||| || || || || | |||||| |||| |||||||
Sbjct 1885 TCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGAC 1944
Query 69554 ATTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATA 69610
||||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || |
Sbjct 1945 ATTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGA 2001
Query 69611 GATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669
|||| |||||||| | || ||| || ||||| | || | |||||| || ||
Sbjct 2002 GATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGG 2060
Query 69670 ttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 69729
|| ||| || || || ||||| | || ||| | ||||| || || ||||| | ||
Sbjct 2061 TTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCA 2120
Query 69730 ATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACT 69789
| | || || || || ||||| || || || | |||||| |||||||| || | |||
Sbjct 2121 AATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACT 2180
Query 69790 CTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTT 69849
| ||||| || | || || || || ||||| || || || | || || || |
Sbjct 2181 CGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTG 2240
Query 69850 GCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAA 69909
|| || || | ||| ||||| || ||||| || |||||||||| | ||||||
Sbjct 2241 GCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACAT 2300
Query 69910 CGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAG 69969
|| | || ||||| ||||| || || || || || |||| | || || || ||
Sbjct 2301 GTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCAT 2360
Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029
|| | ||| ||| || || || || | |||||| || ||||| |||||
Sbjct 2361 GATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAG 2420
Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088
|||| | || | || ||||| || ||||| || || ||||| ||| | |||||
Sbjct 2421 TATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCG-TGAAT 2479
Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128
|| | || |||||||| | ||| || || || ||||||
Sbjct 2480 ACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCT 2519
>SEQ14127
Length=21342
Score = 102 bits (112), Expect = 1e-16
Identities = 303/461 (66%), Gaps = 16/461 (3%)
Strand=Plus/Minus
Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372
|||||| || || ||||| |||||||| | |||||||| || || || |||||| |
Sbjct 14950 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 14891
Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttA-- 39427
| || || || |||||||| || || || || | | || || || | |||
Sbjct 14890 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTACC 14831
Query 39428 AATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTC 39486
|| || | || | | ||| || || || || |||||| ||||||| |||
Sbjct 14830 AAGAGCAACTAGGAGA-----CGATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTC 14776
Query 39487 ACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTC 39546
| ||||| || | ||| | || |||||||| || | || || | |||||| ||
Sbjct 14775 GCG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTC 14717
Query 39547 TACGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGT 39604
|| |||||||| || | || || || ||| | || || | ||| || ||
Sbjct 14716 GACAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGG 14659
Query 39605 TTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTA 39664
|| | | ||| |||||||| ||| || || ||||| | || | || ||
Sbjct 14658 GAGAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTG 14599
Query 39665 GAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT 39724
|| || ||||| |||| ||| | |||||||| |||||||| || || | ||| || |||
Sbjct 14598 GAGAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGAT 14539
Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765
||| ||||||||||| || || || ||||| ||||| ||
Sbjct 14538 CCACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 14498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686778845441400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |