Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 136 3e-27
SEQ14665 104 2e-17
>SEQ14673
Length=3941
Score = 136 bits (150), Expect = 3e-27
Identities = 329/495 (66%), Gaps = 5/495 (1%)
Strand=Plus/Plus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
|||||||| |||| |||||||| | ||| | |||||| |||||| |||||||| ||
Sbjct 1941 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 2000
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722
| |||||| | ||| || || || || ||||| | || ||||| | || ||
Sbjct 2001 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC-ATG 2059
Query 131723 AtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781
|| ||| | | | || || |||| || || ||||| || || | ||| |||||
Sbjct 2060 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 2119
Query 131782 CATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838
| ||| || ||||| || ||||| | || | | | | |||||||| | ||
Sbjct 2120 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 2179
Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898
|| | |||||| | | ||||||| ||| || ||||| | ||||| ||| |
Sbjct 2180 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 2239
Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958
||| | |||| |||||| |||||| ||||||||||| | | ||||||||| | || ||
Sbjct 2240 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 2299
Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCA 132018
| | | || || | ||| ||||| || | |||||| | || || | | |||||
Sbjct 2300 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 2359
Query 132019 AGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078
|| || | ||| || ||| || || || || | ||| ||| ||||||||| ||
Sbjct 2360 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 2419
Query 132079 AAGTTTTTTGGCCAT 132093
||| |||| |||
Sbjct 2420 GTATTTGTTGGACAT 2434
>SEQ14665
Length=6019
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
||||| || | || || |||||||| || ||||||||||||| | |||| | ||||||
Sbjct 2505 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 2446
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| |||||||| ||| | || | ||| ||||||||||| || | ||||| || || |
Sbjct 2445 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 2386
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | || | ||||| | | || || || ||||| || | |||
Sbjct 2385 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 2326
Query 27219 CCCGTCAGAGTTTTCAC 27235
|| || ||||| || ||
Sbjct 2325 CCAGTGAGAGTCTTGAC 2309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424856017530120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |