Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 136 3e-27 SEQ14665 104 2e-17 >SEQ14673 Length=3941 Score = 136 bits (150), Expect = 3e-27 Identities = 329/495 (66%), Gaps = 5/495 (1%) Strand=Plus/Plus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 |||||||| |||| |||||||| | ||| | |||||| |||||| |||||||| || Sbjct 1941 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 2000 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | |||||| | ||| || || || || ||||| | || ||||| | || || Sbjct 2001 AGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC-ATG 2059 Query 131723 AtttttttCAAATTTAAA-AAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 || ||| | | | || || |||| || || ||||| || || | ||| ||||| Sbjct 2060 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 2119 Query 131782 CATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATAC 131838 | ||| || ||||| || ||||| | || | | | | |||||||| | || Sbjct 2120 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAAC 2179 Query 131839 GCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATT 131898 || | |||||| | | ||||||| ||| || ||||| | ||||| ||| | Sbjct 2180 TCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 2239 Query 131899 GGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCA 131958 ||| | |||| |||||| |||||| ||||||||||| | | ||||||||| | || || Sbjct 2240 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 2299 Query 131959 TTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCA 132018 | | | || || | ||| ||||| || | |||||| | || || | | ||||| Sbjct 2300 TGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCA 2359 Query 132019 AGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078 || || | ||| || ||| || || || || | ||| ||| ||||||||| || Sbjct 2360 TGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 2419 Query 132079 AAGTTTTTTGGCCAT 132093 ||| |||| ||| Sbjct 2420 GTATTTGTTGGACAT 2434 >SEQ14665 Length=6019 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || |||||||| || ||||||||||||| | |||| | |||||| Sbjct 2505 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 2446 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || |||||||| ||| | || | ||| ||||||||||| || | ||||| || || | Sbjct 2445 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGG 2386 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | || || || ||||| || | ||| Sbjct 2385 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 2326 Query 27219 CCCGTCAGAGTTTTCAC 27235 || || ||||| || || Sbjct 2325 CCAGTGAGAGTCTTGAC 2309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424856017530120