Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 212 8e-50
>SEQ14673
Length=3941
Score = 212 bits (234), Expect = 8e-50
Identities = 940/1466 (64%), Gaps = 43/1466 (3%)
Strand=Plus/Plus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||||||||| | ||||||||||||||||| || || ||| | ||||| | ||||
Sbjct 1133 GTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCT 1192
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
|||||||||||| || || | | | |||||| || | ||| | | ||||| ||
Sbjct 1193 GGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATTGATTT 1252
Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885
||| | ||||||||| | | | | ||| | || | ||||||| || | ||||
Sbjct 1253 CTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAA 1311
Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945
| | || | || | || || || || | || ||||||| ||| | | ||| |
Sbjct 1312 GTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAA 1371
Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005
||| | || || | ||||| || || ||||| ||||| || || | |
Sbjct 1372 TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGT 1431
Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACC 111063
|||||||||| ||| ||||||| ||| | | | || ||| |||| || |||||
Sbjct 1432 GCTTGGCTTCAGGTGATTCAAATG-GTAATCGAAGAGCCAAGAAAG-CATCGGCAAGACC 1489
Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGG 111122
||||||||| | | | ||||||| || || | ||| ||||| || ||| ||||
Sbjct 1490 TTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGG 1548
Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182
| || | || ||||||||| ||| | ||| || ||| | | || | || |
Sbjct 1549 GGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGT 1608
Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGA 111239
|||| |||| |||| |||| | ||| ||||| ||| | |||| || || |
Sbjct 1609 GAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAA 1665
Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299
| || ||||| || || ||| ||||| | | ||| || | ||||||||| |
Sbjct 1666 TGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGC 1725
Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359
| || ||||| || ||| || || | |||||||||||||||||||| ||||| ||||
Sbjct 1726 ACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTTATTGCATGCAT 1785
Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419
||||||| |||||| | || | || ||||| || || | | |||||| | | |||||
Sbjct 1786 CCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAA 1845
Query 111420 CATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476
| ||| | |||| ||| | | || ||| ||| || | ||||
Sbjct 1846 GCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGA 1902
Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGA 111533
| ||||||||||| || || | || | | || || | | ||| || || |
Sbjct 1903 GAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACA 1959
Query 111534 AAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591
|| | ||| | || | ||| ||||| ||||||||||| || || ||||||||||
Sbjct 1960 TTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAA 2017
Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651
|| | || ||||| | || | ||||| | || ||||| ||| | || ||
Sbjct 2018 GGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCAG 2077
Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711
|||||| | | ||| |||||||| ||||||||||||||||| | || | ||||
Sbjct 2078 GAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACG 2134
Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765
| ||| |||| | || || | || ||| ||| || || || ||||| || |
Sbjct 2135 CTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTAC 2194
Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825
|| || | || | ||| || || || || | | |||| | | ||
Sbjct 2195 GATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTG 2254
Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885
|||| | |||||||| ||||| || ||||| ||||| | | || || |
Sbjct 2255 AATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATC 2314
Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945
||| ||||| | || ||||||||| | | || |||||||| || | ||| |
Sbjct 2315 ATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGC 2374
Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACA 112004
| |||||||||||| ||| || || || | ||||| |||| || | | |||||
Sbjct 2375 TTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACA 2433
Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064
| || ||| ||||| | | | ||||| || || ||||| || || | || || |
Sbjct 2434 TAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAATACCAACGGCAACAC 2493
Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTC 112123
|||||| ||| | ||||| ||| | | |||||||| || |||| || | ||
Sbjct 2494 GCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC 2553
Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149
||| ||||| |||| || |||||
Sbjct 2554 -GCTCGAGGGTCTTGAATCCGAAGTA 2578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627913184196000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |