Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 212 8e-50 >SEQ14673 Length=3941 Score = 212 bits (234), Expect = 8e-50 Identities = 940/1466 (64%), Gaps = 43/1466 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||||||||||||||| || || ||| | ||||| | |||| Sbjct 1133 GTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCGAGAATTTGAGAGGTGCT 1192 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 |||||||||||| || || | | | |||||| || | ||| | | ||||| || Sbjct 1193 GGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACCGTGTTGTTTGATTGATTT 1252 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTGGTTTCACCTTCCCACATGTCAAACTGAA 110885 ||| | ||||||||| | | | | ||| | || | ||||||| || | |||| Sbjct 1253 CTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAAC-TCCCCACATATCGTATTGAA 1311 Query 110886 GCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCA 110945 | | || | || | || || || || | || ||||||| ||| | | ||| | Sbjct 1312 GTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGTCTCATAGGTACCCAACTCCTTAGCAA 1371 Query 110946 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 111005 ||| | || || | ||||| || || ||||| ||||| || || | | Sbjct 1372 TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGT 1431 Query 111006 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACC 111063 |||||||||| ||| ||||||| ||| | | | || ||| |||| || ||||| Sbjct 1432 GCTTGGCTTCAGGTGATTCAAATG-GTAATCGAAGAGCCAAGAAAG-CATCGGCAAGACC 1489 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGG 111122 ||||||||| | | | ||||||| || || | ||| ||||| || ||| |||| Sbjct 1490 TTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCTCTTTCTGGCC-TCTGGGACGG 1548 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCAT 111182 | || | || ||||||||| ||| | ||| || ||| | | || | || | Sbjct 1549 GGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGACAACGACTTGAGTAACCTCGT 1608 Query 111183 GAAGTTTTTCATAATCAAAAGTGCGAGTCTC-TTCATTG--ACATACTTTGGAAGGGCGA 111239 |||| |||| |||| |||| | ||| ||||| ||| | |||| || || | Sbjct 1609 GAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCATGTCCACAAATGTTGGGAGAGCAA 1665 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || ||||| || || ||| ||||| | | ||| || | ||||||||| | Sbjct 1666 TGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTATTCGACAATTTCTGTGC 1725 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | || ||||| || ||| || || | |||||||||||||||||||| ||||| |||| Sbjct 1726 ACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTCTTCTTATTGCATGCAT 1785 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||||| |||||| | || | || ||||| || || | | |||||| | | ||||| Sbjct 1786 CCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAA 1845 Query 111420 CATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476 | ||| | |||| ||| | | || ||| ||| || | |||| Sbjct 1846 GCTTTTGGGC---TTTGATGGTCTTGCGACCTCTACCTTCCTTCTCATAACTCTCATAGA 1902 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG---TGCCTTGTCTGGACAGA 111533 | ||||||||||| || || | || | | || || | | ||| || || | Sbjct 1903 GAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACATTCATTG---GGGCACA 1959 Query 111534 AAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 || | ||| | || | ||| ||||| ||||||||||| || || |||||||||| Sbjct 1960 TTAGTGTCCAAT--CCGCGTTCTTTTCAACACGCTTCATGAAGAGATCCGGAATCCACAA 2017 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAG 111651 || | || ||||| | || | ||||| | || ||||| ||| | || || Sbjct 2018 GGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTTCGGAGGTCCAG 2077 Query 111652 GAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACG 111711 |||||| | | ||| |||||||| ||||||||||||||||| | || | |||| Sbjct 2078 GAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC---AAATGCACCAGGACG 2134 Query 111712 C------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 | ||| |||| | || || | || ||| ||| || || || ||||| || | Sbjct 2135 CTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGCATGGGTAC 2194 Query 111766 AATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATG 111825 || || | || | ||| || || || || | | |||| | | || Sbjct 2195 GATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGGATTCTGTG 2254 Query 111826 GATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 |||| | |||||||| ||||| || ||||| ||||| | | || || | Sbjct 2255 AATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTATC 2314 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||| ||||| | || ||||||||| | | || |||||||| || | ||| | Sbjct 2315 ATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGAGC 2374 Query 111946 TCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACA 112004 | |||||||||||| ||| || || || | ||||| |||| || | | ||||| Sbjct 2375 TTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA-GTATTTGTTGGACA 2433 Query 112005 TCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCC 112064 | || ||| ||||| | | | ||||| || || ||||| || || | || || | Sbjct 2434 TAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAATACCAACGGCAACAC 2493 Query 112065 GCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTC 112123 |||||| ||| | ||||| ||| | | |||||||| || |||| || | || Sbjct 2494 GCATGATCATTTGTTGTGGACGTTCTGCAACTTTTCCATCGAGTCGAAGAAGGTACGATC 2553 Query 112124 TTCTCAAGGGTTTTGAGACCAAAGTA 112149 ||| ||||| |||| || ||||| Sbjct 2554 -GCTCGAGGGTCTTGAATCCGAAGTA 2578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627913184196000