Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 149 8e-31 SEQ14127 111 2e-19 >SEQ14673 Length=3941 Score = 149 bits (164), Expect = 8e-31 Identities = 1122/1782 (63%), Gaps = 55/1782 (3%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 757 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 816 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 || ||||| || | |||||| || | | |||| | || || || |||| Sbjct 817 CCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 876 Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984 | |||||| ||| || || || | ||| || || || || ||||| | || || Sbjct 877 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGCGGCCATTTGAA-CA 935 Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042 || ||| | || | ||||| || ||| |||| || ||| || ||| |||| || Sbjct 936 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 994 Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102 | || ||||| || || ||||| | || || | | |||||| | | ||| Sbjct 995 GTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTTCATGTTGTCTGA 1054 Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160 ||| | || || | ||||||| | || ||| | | ||||| || || Sbjct 1055 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 1112 Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219 || || | | || | ||| ||||| || | |||||||| ||||||||||| ||| Sbjct 1113 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 1171 Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279 ||| | ||||| | ||| |||||| ||||| || || | ||| | ||||| |||| Sbjct 1172 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 1231 Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGCG-TCCCAGTCGTA---GTTG--AGCTTTGT 118333 ||| | || | || || ||| | ||| |||||||| | || | || | | Sbjct 1232 ACCGTGTTGTTTGATTGATTTCTTCA-AGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAA 1290 Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393 |||||| ||||||| | || || || | || | || || || || | || Sbjct 1291 CTCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAAGT 1345 Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453 |||||| | ||| ||| || | || | || | || ||||| || || Sbjct 1346 CTCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAAT 1405 Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGC- 118512 ||||| || || || || | |||||| || || ||||| | | ||| Sbjct 1406 AGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAG 1465 Query 118513 ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATAT 118572 | || ||| |||| || |||||||| ||||||| | || || ||||| | | || Sbjct 1466 AGCCAAGAAAG-CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAAT 1524 Query 118573 TAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTT 118631 | ||| | || ||| ||||| || | || | || || | | | || | ||| Sbjct 1525 TGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTT 1583 Query 118632 TTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTC 118690 || || || | || | || |||||||||| | |||| || | | ||| ||| Sbjct 1584 CTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTC 1640 Query 118691 ATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || ||| | | || || || || || |||| ||||| || | ||||| Sbjct 1641 ATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGG 1700 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 ||| ||| || | |||||| |||||||| || || || ||||||||| | ||||||| Sbjct 1701 GCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTT 1760 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 118868 || || ||| | || || |||||||||||||||||| |||| | || ||||| ||| Sbjct 1761 TGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTT 1820 Query 118869 TGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCGC 118925 || | || |||||| | | ||| | | ||| | ||| ||| ||| Sbjct 1821 TGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTA 1877 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 || || | ||| || | ||||| ||||||||||| || || | || | | | Sbjct 1878 CCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAAC 1937 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || || | || ||||| | || | ||| | | || ||||| ||||||||| Sbjct 1938 CCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATG 1997 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||| || || ||||| | || |||| ||||| || ||| ||||||| | || Sbjct 1998 AAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCA 2057 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || || | |||| || || | | ||| |||||||| || || || || || Sbjct 2058 TGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACT 2117 Query 119166 GCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTA 119219 || | || || | |||| ||| | |||| || || || |||||| ||| Sbjct 2118 GCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 2174 Query 119220 AATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAG 119277 || || || ||||| || | ||| || | ||| | || || || || ||| || | Sbjct 2175 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG-C 2233 Query 119278 ACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTT 119337 || | |||| | || ||| |||| | ||||||||| || || || ||||| Sbjct 2234 AC-CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCA 2292 Query 119338 GCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGA 119397 || || | |||| | | || || ||||| || ||| |||| | | |||| Sbjct 2293 TAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGA 2352 Query 119398 GGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCG 119456 ||||||| || | ||| || || |||||||||||| ||| || || || | ||| Sbjct 2353 GGAAGCATGATGAAAGCTGA-GCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCG 2411 Query 119457 TGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTC 119515 || |||| || | | |||||| || ||||||||| | | || ||| || || Sbjct 2412 TGTGTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTC 2470 Query 119516 CCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||||||||||| | | || ||||| | ||| | ||| || Sbjct 2471 ACCGTGAATACCAACGGCAACACGCATGATCATTTGTTGTGG 2512 >SEQ14127 Length=21342 Score = 111 bits (122), Expect = 2e-19 Identities = 300/451 (67%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| ||||| | ||||||||||||||||||||| || | | | ||| |||||||| Sbjct 14931 TAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATGTTCTCCATG 14872 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || |||||||| || || | | | || | |||| |||||||| Sbjct 14871 AAGTCGAATGGGTTGGAAGACTTGTACACCTTCTCGTTA-CCAAGAGCAACTAGGAGACG 14813 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | |||| |||| ||||| | |||| | | |||||| || | || ||| Sbjct 14812 ATCGGCGACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAAGAAGTGCACA 14753 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | ||| ||| || || || ||||| || | || | || Sbjct 14752 AGGAAGAGCCTCGGTCAAGAATTCCTGTTCGATCTCGACAGCCTCTGTGATGACATCTTG 14693 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTC-CACGGCAAACTCC 130024 | | || | ||| || | | || |||| |||||| |||| | || || Sbjct 14692 GACAGCCTGCTTGCTTGGACGGT-GCTTCAAGTGGGAGAAGAGGAGGCACG-CGAAGTCG 14635 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | Sbjct 14634 GTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAG 14575 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| ||| Sbjct 14574 CCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACA 14515 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGG 130175 || || |||| ||||||| |||||||| Sbjct 14514 GCAGCAAAAGCAACCAGACGCTGAGCAAAGG 14484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618318199790600