Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 215 6e-51 SEQ14127 129 7e-25 >SEQ14673 Length=3941 Score = 215 bits (238), Expect = 6e-51 Identities = 1118/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 ||||| | ||| ||||||| || ||| | |||||||| || || || ||||| | | Sbjct 2512 CCACAACAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCC 2453 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||||| | | || |||| ||||| | || || || || Sbjct 2452 ATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTACACTTTT 2394 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | |||||||||||| | | || | || |||||||| || | | |||||||| Sbjct 2393 CTCCGCTGGTACACCACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGA 2334 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | || | ||||| |||| || || | | ||||| ||||| || ||||| Sbjct 2333 CAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGG 2274 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | |||| || | | |||| | | || || || || Sbjct 2273 AGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAA 2214 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | || || | || ||||| || || || ||| ||| || | || || Sbjct 2213 CGGTAACTCCAACGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGT 2154 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | |||| ||| ||||| | || | ||||||||||||||||| ||||| Sbjct 2153 CGACCAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCA 2097 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| | | |||||||| || | || ||||| || | || || | || Sbjct 2096 CGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGC 2037 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| Sbjct 2036 CCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAA 1977 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCTGGTCTCTCCGATGCCGTGGG 104811 | ||||| | || | || || ||| | | ||||| | | |||| || Sbjct 1976 CGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGG 1920 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || ||||||||||| || || | || ||| | |||||| | | | | || ||| Sbjct 1919 CGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACC 1862 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | ||| | | ||| | | |||||| || ||||||||||||| || | ||| Sbjct 1861 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACCGAGACCGGAAATCCA 1802 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||||||||| || || || || | |||||||| |||||||| | || || Sbjct 1801 TTCATGCTTTACAAGGATGCATGCAATAAGAAGAGTAACCAAAAGAACCTCGGCACCATT 1742 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || |||||| | || |||||||| | |||| | | | |||||| ||| Sbjct 1741 CGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGC 1682 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACATTTGA 105108 |||||| | || || || |||||||| | | |||||| | || | | || | || Sbjct 1681 TGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGA 1623 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || |||| || ||||| ||||| || || || |||| | |||| | ||||| Sbjct 1622 TTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGA 1563 Query 105169 TAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | |||||||| ||| || | || ||| | | || || || || | Sbjct 1562 CATCAACTACTACCCCGTCCCAGA-GGCCAGAAAGAGCAATTTCCGTCATCGACCTATCG 1504 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | |||||||||| ||||| || |||| ||| | | ||| ||||||| || Sbjct 1503 CTGTCGGTGTTCAAGGTCTTGCCGATGCTTTCTTGGCTCTTCGATTACCATTTGAATCAC 1444 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGA-- 105345 ||||| ||| | |||| | || || || || || || ||||| ||| |||| Sbjct 1443 CTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGACA 1385 Query 105346 -GGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 | ||| ||| | || |||| ||| | ||||| || | || || || || | Sbjct 1384 TCGTCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACTTACGAAGGCTCACCTG 1327 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGAC 105463 || | || | ||||||| |||||||||| | || | ||| | | | | ||| Sbjct 1326 TCTCGAAGGGCGAACTTCAATACGATATGTGGGGA-GTTACACCTACCGACCTTTGGGAC 1268 Query 105464 TGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| |||| | ||| || ||||| | | ||| | || |||||| | ||| | || Sbjct 1267 TGGGATAGCT-TGAAGAAATCAATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGC 1209 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 ||| |||||||||||| |||| | ||||| | ||| || || ||||||||||| || Sbjct 1208 TCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATA 1149 Query 105583 CACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||| | |||||||| ||| | | | | || ||||| || |||| ||| | Sbjct 1148 CACTTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CC 1092 Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696 || || | | || || || || || | ||||| | | |||||| | | | Sbjct 1091 ATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTAT 1032 Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | ||| |||||||| |||||||| ||| | |||||| ||| || ||| Sbjct 1031 CATCGCTGA----CGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 976 Query 105756 AGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGA 105813 | ||| || || ||||| | || | ||| | | || | |||||||| || Sbjct 975 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGA 918 Query 105814 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACG 105871 |||||| ||| |||| | ||||| | | ||||| | |||| || || || Sbjct 917 CCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACA 860 Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931 ||| |||| | |||| ||||| | ||||||| ||||||||| || || ||| Sbjct 859 ATGGGCAAGATTACTTCCATGCATTTCGCTGGTTGGAAATTGGGTCTCAAGACCGGAATG 800 Query 105932 TATTACCTCCG 105942 || |||||||| Sbjct 799 TACTACCTCCG 789 >SEQ14127 Length=21342 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790 |||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| | Sbjct 14420 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 14479 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | |||||||| |||| || | || ||||| ||||||||| ||||||||| ||| Sbjct 14480 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 14538 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || ||| |||| | |||||||||||||| || | ||| | |||||| ||||| Sbjct 14539 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 14598 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| ||||| ||||| ||||| || || ||||| Sbjct 14599 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 14631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583150454347400