Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 232 7e-56 SEQ14127 111 2e-19 >SEQ14673 Length=3941 Score = 232 bits (256), Expect = 7e-56 Identities = 690/1047 (66%), Gaps = 38/1047 (4%) Strand=Plus/Plus Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923 || ||| ||||||| || || || || |||| |||||| ||||| || || | ||||| Sbjct 1469 CAAGAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCT 1528 Query 78924 CTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCG 78982 ||||| |||| | | || |||| || |||| || |||| ||||| ||| | Sbjct 1529 CTTTCTGGCCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 1587 Query 78983 TGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG-- 79038 ||||| |||| ||||||| | || |||||| || || ||| || ||| Sbjct 1588 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTC 1645 Query 79039 ----AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCT 79091 || || || || ||| | || |||| ||| || || | || || | || ||| Sbjct 1646 CACAAATGTTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGC 1702 Query 79092 AGAAACCTCGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCT 79147 ||| |||| ||||||||||||||||| || ||| |||||||||| ||||| Sbjct 1703 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCT 1758 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 | ||||| ||||||| || || || |||||||| |||| | || | |||||||| Sbjct 1759 TTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGG 1818 Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTAC 79263 ||| || ||||| | || ||| | | |||| || ||| | | ||| Sbjct 1819 TTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTAC 1878 Query 79264 CGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGC 79323 | || | | | || || || | | | || | || ||||| ||||| | | Sbjct 1879 CTTCCTTCT----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCC 1934 Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 | || || || || | |||||||| || ||| ||| ||| ||| ||||| || | Sbjct 1935 AACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTC 1994 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 |||||||| ||||| ||||||| ||| ||| || || ||| || | || || | | Sbjct 1995 ATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 2054 Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || |||||| || || || || || || | | || |||||||| ||||| |||||| Sbjct 2055 CCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 2114 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 | || || | ||| |||||| || || |||| |||||| | || ||||||||| Sbjct 2115 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 2174 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 |||||||| |||||||| |||||||||| || | ||||| || ||| ||| || | Sbjct 2175 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 2234 Query 79624 CCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 || | || || || | | | | || || || || || || | || ||||| Sbjct 2235 CCAGTGGCACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCAT 2293 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 || || |||||| || || || || || || || ||| ||||||||| | | || Sbjct 2294 AGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAG 2353 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801 |||||| || | ||| | |||| ||||| ||| ||| || || || | |||| Sbjct 2354 GAAGCATGATGAAAGCTG-AGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGT 2412 Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGC 79861 | |||||| | || | | ||| || | ||| ||||| || ||| | | ||||| | Sbjct 2413 GTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCAC 2472 Query 79862 CGTGGATGCCGACCGCGACGCGCATGA 79888 |||| || || || || || ||||||| Sbjct 2473 CGTGAATACCAACGGCAACACGCATGA 2499 Score = 178 bits (196), Expect = 1e-39 Identities = 397/591 (67%), Gaps = 4/591 (1%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175 ||||||| || || || || || || || ||||| | | | | | ||||| ||| Sbjct 2499 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCCATTGAGACCTACA 2440 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 |||| ||| | | || | |||||| ||||| | || || |||||| ||| ||||| Sbjct 2439 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 2380 Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294 |||| | ||| | || || ||||| | | ||||||||| ||||| ||||| || Sbjct 2379 CACAAGCT-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGT 2321 Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354 || || || || |||||| || || ||||| || | || ||||| || || Sbjct 2320 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 2261 Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413 || | | | | ||||| | | |||| || ||| || || ||||| || | Sbjct 2260 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 2202 Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473 ||| ||||| || ||||| || || ||||||||||| || || |||||| |||| || || Sbjct 2201 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 2142 Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533 ||| || || | || || |||| || ||||| |||||||| || || | || Sbjct 2141 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 2082 Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593 ||||| || || || |||||| || | || || | ||| || || || ||| Sbjct 2081 GTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 2022 Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653 ||||||||||||||||| || |||||| || ||||| ||| ||| || ||| || Sbjct 2021 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 1962 Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704 |||||||| | ||||| ||||| | | || || || ||||| | ||| Sbjct 1961 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 1911 >SEQ14127 Length=21342 Score = 111 bits (122), Expect = 2e-19 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031 ||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || || Sbjct 14486 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 14544 Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091 | | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| || Sbjct 14545 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 14604 Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119 ||| || ||||| || || || |||||| Sbjct 14605 GCTCATCTCCCGTGATGAAGGTCTCCAT 14632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548421025964400