Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 232 7e-56
SEQ14127 111 2e-19
>SEQ14673
Length=3941
Score = 232 bits (256), Expect = 7e-56
Identities = 690/1047 (66%), Gaps = 38/1047 (4%)
Strand=Plus/Plus
Query 78864 CATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCT 78923
|| ||| ||||||| || || || || |||| |||||| ||||| || || | |||||
Sbjct 1469 CAAGAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTGCT 1528
Query 78924 CTTTCGGGCCGCCTCGGTCGGG-TAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCG 78982
||||| |||| | | || |||| || |||| || |||| ||||| ||| |
Sbjct 1529 CTTTCTGGCCTC-TGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 1587
Query 78983 TGACGACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCT--TTGATG-- 79038
||||| |||| ||||||| | || |||||| || || ||| || |||
Sbjct 1588 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAG--TTCCCTCATTCATGTC 1645
Query 79039 ----AAAGTCGGTAG-GCACAGCGATGCCAGGTTGCA-CACGGCCGTCT-CGTCCGGGCT 79091
|| || || || ||| | || |||| ||| || || | || || | || |||
Sbjct 1646 CACAAATGTTGGGAGAGCAATG-GAAGCCAAGTTACAGCAAG--CGACTTCATCTGGGGC 1702
Query 79092 AGAAACCTCGATGATTTCTGTGCACAAATTAGA----CGACTTGATGGTGCCGATGTTCT 79147
||| |||| ||||||||||||||||| || ||| |||||||||| |||||
Sbjct 1703 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGA----ATGGTGCCGAGGTTCT 1758
Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207
| ||||| ||||||| || || || |||||||| |||| | || | ||||||||
Sbjct 1759 TTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGG 1818
Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTAC 79263
||| || ||||| | || ||| | | |||| || ||| | | |||
Sbjct 1819 TTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTAC 1878
Query 79264 CGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGC 79323
| || | | | || || || | | | || | || ||||| ||||| | |
Sbjct 1879 CTTCCTTCT----CATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCC 1934
Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383
| || || || || | |||||||| || ||| ||| ||| ||| ||||| || |
Sbjct 1935 AACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTC 1994
Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443
|||||||| ||||| ||||||| ||| ||| || || ||| || | || || | |
Sbjct 1995 ATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTG 2054
Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503
|| |||||| || || || || || || | | || |||||||| ||||| ||||||
Sbjct 2055 CCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAG 2114
Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563
| || || | ||| |||||| || || |||| |||||| | || |||||||||
Sbjct 2115 ACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTG 2174
Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623
|||||||| |||||||| |||||||||| || | ||||| || ||| ||| || |
Sbjct 2175 AAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCA 2234
Query 79624 CCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682
|| | || || || | | | | || || || || || || | || |||||
Sbjct 2235 CCAGTGGCACGGAT-TCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCAT 2293
Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742
|| || |||||| || || || || || || || ||| ||||||||| | | ||
Sbjct 2294 AGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAG 2353
Query 79743 GAAGCAGCTCGACATCTGTGGGTTGT-TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGT 79801
|||||| || | ||| | |||| ||||| ||| ||| || || || | ||||
Sbjct 2354 GAAGCATGATGAAAGCTG-AGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGT 2412
Query 79802 GCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGC 79861
| |||||| | || | | ||| || | ||| ||||| || ||| | | ||||| |
Sbjct 2413 GTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCAC 2472
Query 79862 CGTGGATGCCGACCGCGACGCGCATGA 79888
|||| || || || || || |||||||
Sbjct 2473 CGTGAATACCAACGGCAACACGCATGA 2499
Score = 178 bits (196), Expect = 1e-39
Identities = 397/591 (67%), Gaps = 4/591 (1%)
Strand=Plus/Minus
Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACG 19175
||||||| || || || || || || || ||||| | | | | | ||||| |||
Sbjct 2499 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCCATTGAGACCTACA 2440
Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235
|||| ||| | | || | |||||| ||||| | || || |||||| ||| |||||
Sbjct 2439 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 2380
Query 19236 -ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGC 19294
|||| | ||| | || || ||||| | | ||||||||| ||||| ||||| ||
Sbjct 2379 CACAAGCT-CAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGT 2321
Query 19295 ATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC 19354
|| || || || |||||| || || ||||| || | || ||||| || ||
Sbjct 2320 ATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTC 2261
Query 19355 CAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGA 19413
|| | | | | ||||| | | |||| || ||| || || ||||| || |
Sbjct 2260 AACATTCACAGA-ATCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 2202
Query 19414 CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGG 19473
||| ||||| || ||||| || || ||||||||||| || || |||||| |||| || ||
Sbjct 2201 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 2142
Query 19474 CGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGA 19533
||| || || | || || |||| || ||||| |||||||| || || | ||
Sbjct 2141 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 2082
Query 19534 TTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCAC 19593
||||| || || || |||||| || | || || | ||| || || || |||
Sbjct 2081 GTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 2022
Query 19594 GGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCT 19653
||||||||||||||||| || |||||| || ||||| ||| ||| || ||| ||
Sbjct 2021 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 1962
Query 19654 GATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTT 19704
|||||||| | ||||| ||||| | | || || || ||||| | |||
Sbjct 1961 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTT 1911
>SEQ14127
Length=21342
Score = 111 bits (122), Expect = 2e-19
Identities = 115/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTT 60031
||||| || ||||| | |||||||| ||| || || || ||||||||| ||| || ||
Sbjct 14486 TTTGCTCAGCGTCTGGTTGCTTTTGC-TGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 14544
Query 60032 CTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGA 60091
| | |||| ||||||||||| ||||||||| | ||| | || || | ||||||||| ||
Sbjct 14545 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 14604
Query 60092 GCTGATTTCCCGGGACGAGGGCCTCCAT 60119
||| || ||||| || || || ||||||
Sbjct 14605 GCTCATCTCCCGTGATGAAGGTCTCCAT 14632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548421025964400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |