Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 179 4e-40
>SEQ14673
Length=3941
Score = 179 bits (198), Expect = 4e-40
Identities = 397/592 (67%), Gaps = 4/592 (1%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || ||| | ||||| ||||||||||| | | | | |||||| |||
Sbjct 2499 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCCATTGAGACCTACA 2440
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
|| | ||| | | || ||||| || |||||| | || || || ||| |||||||||
Sbjct 2439 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 2380
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| ||||| | || |||||||| | | |||||||| ||| || || || |
Sbjct 2379 CACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGTA 2320
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432
| || || || |||||| ||||| ||||| || | || ||||| ||| ||
Sbjct 2319 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 2260
Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| | | | ||| ||||||| | || || ||| || || ||||| | || |
Sbjct 2259 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 2202
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| ||||| || ||||| || || ||||||||||| || | |||||| |||| |||||
Sbjct 2201 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 2142
Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610
||||| || | || || |||| || ||||| |||||||| || || | ||
Sbjct 2141 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 2082
Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670
||| || || || || ||| || || | ||||| | ||| |||||| || ||
Sbjct 2081 GTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 2022
Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730
|| ||||||||||||| ||||||||| | || || ||| ||| ||| ||| ||
Sbjct 2021 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 1962
Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
|||||||| || || || || || | | ||| || || || ||||||
Sbjct 1961 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTT 1910
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547112473573000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |