Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 179 4e-40 >SEQ14673 Length=3941 Score = 179 bits (198), Expect = 4e-40 Identities = 397/592 (67%), Gaps = 4/592 (1%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || ||| | ||||| ||||||||||| | | | | |||||| ||| Sbjct 2499 TCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATTGAGAGCGCCATTGAGACCTACA 2440 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | || ||||| || |||||| | || || || ||| ||||||||| Sbjct 2439 ACCTTATGTCCAACAAATACTTCACACACGCCTCCCCTACACTTTTCTCCGCTGGTACAC 2380 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || ||||| | || |||||||| | | |||||||| ||| || || || | Sbjct 2379 CACAAGCTCAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGACAGTATTGATGGTA 2320 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 | || || || |||||| ||||| ||||| || | || ||||| ||| || Sbjct 2319 TTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGGAGGTATTGGTCTCA 2260 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| ||||||| | || || ||| || || ||||| | || | Sbjct 2259 ACATTCACAGAA--TCCGTGCCACTGGTGCATACATCGCCGGTACCAACGGTAACTCCAA 2202 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || ||||| || ||||| || || ||||||||||| || | |||||| |||| ||||| Sbjct 2201 CGGCATCGTACCCATGCTACGAGTTTTCAACAACACTGCTAGATACGTCGACCAAGGTGG 2142 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || || |||| || ||||| |||||||| || || | || Sbjct 2141 AAACAAGCGTCCTGGTGCATTTGCAGTCTATCTTGAGCCTTGGCACGCAGATGTTTTCGA 2082 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTAC 53670 ||| || || || || ||| || || | ||||| | ||| |||||| || || Sbjct 2081 GTTCCTGGACCTCCGAAAGAACCATGGCAAGGAAGAAGTCCGCGCCCGTGATCTTTTCTA 2022 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCT 53730 || ||||||||||||| ||||||||| | || || ||| ||| ||| ||| || Sbjct 2021 TGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAACGCGGATTGGACACT 1962 Query 53731 GATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 |||||||| || || || || || | | ||| || || || |||||| Sbjct 1961 AATGTGCCCCAATGAATGTCCTGGGTTGGCTGATGTATATGGCGACGAGTTT 1910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547112473573000