Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 170 2e-37
SEQ14665 158 1e-33
SEQ14673 156 5e-33
seq515 149 7e-31
>seq6733
Length=2883
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| ||||| || || || || || || || || || |||||||| || |
Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||| | || || ||||||||||||||||| || || || |||
Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||||| || || || || ||||||||||| |||| || ||||| | ||||| ||
Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||||||||||||||| | ||| | ||||| || |||||
Sbjct 1620 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 1574
>SEQ14665
Length=6019
Score = 158 bits (174), Expect = 1e-33
Identities = 166/216 (77%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477
|||||||| || || |||||||| || ||||| ||||| ||||| || | ||| |
Sbjct 2309 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGAC 2368
Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537
||| | ||| | || || |||||||||||||| |||||||| || || || ||| | ||
Sbjct 2369 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATC 2428
Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596
|| |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| ||
Sbjct 2429 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 2487
Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||| ||||| | || | || ||||| |||||
Sbjct 2488 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 2523
Score = 136 bits (150), Expect = 5e-27
Identities = 154/204 (75%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || || ||||| ||||| | |||| || | || | |||
Sbjct 2037 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGC 2096
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| |||||||| |||||||||||||| || ||||| ||||| | || || || || ||
Sbjct 2097 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2156
Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||||| || |||| |||||| | ||| |||||||| | |||||||| || ||||| ||
Sbjct 2157 CAACTTGAAGATGGCCGTACCTTGAGC-GACTATAACATTCAAAAGGAGTCTACTCTCCA 2215
Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632
||| ||| | |||||||| || ||
Sbjct 2216 TCTCGTCCTCCGTCTTCGTGGCGG 2239
Score = 127 bits (140), Expect = 2e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||||| || |||||||| || || || |||||||| ||||| || |||||||||||||||
Sbjct 2541 ATTCAAGATAAGGAGGGTATCCCACCGGACCAGCAACGTCTTATCTTTGCTGGTAAGCAA 2600
Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612
|| ||||||| ||| || ||| ||||||| || |||| || || ||||| || ||| |
Sbjct 2601 CTTGAGGATGGTCGCACTCTATCAGACTACAACATCCAGAAAGAGTCCACACTGCATTTG 2660
Query 27613 GTCTTGCGTCTTCGCGGTGG 27632
||| | ||||| || |||||
Sbjct 2661 GTCCTTCGTCTCCGTGGTGG 2680
Score = 120 bits (132), Expect = 3e-22
Identities = 183/258 (71%), Gaps = 6/258 (2%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| | ||||| ||||| ||||| | || || || ||
Sbjct 2682 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 2741
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||||| ||| | ||| | || ||||| ||||||||||| || || || |||||
Sbjct 2742 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 2801
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || |||||||| ||||| | ||||||| | || || | || || ||
Sbjct 2802 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 2861
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645
| || ||||| |||| | || | || | |||||||| || || ||| || | |
Sbjct 2862 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 2918
Query 27646 -TTTTC--CTGCACATAT 27660
||||| ||||||||||
Sbjct 2919 CTTTTCTTCTGCACATAT 2936
>SEQ14673
Length=3941
Score = 156 bits (172), Expect = 5e-33
Identities = 521/802 (65%), Gaps = 19/802 (2%)
Strand=Plus/Plus
Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009
||||| ||||| ||||||||||| || ||| || || ||||| || ||||| |
Sbjct 1710 TCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTC 1769
Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069
|| ||||| || |||||||| |||| | || | ||||||||| || | || |
Sbjct 1770 TTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCG 1829
Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129
|| |||| || ||||| || | || |||| |||||| | | ||||| | ||
Sbjct 1830 AGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTCA 1889
Query 81130 TACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186
|| | | || |||||| |||| | | || | | |||| | | || ||
Sbjct 1890 TAACTCTCATAGAGAGCTTCA---AACTCGTCGCCATATACATCAGCCAACCCAGGACAT 1946
Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246
|| || |||||||| || ||| || | || || || ||| ||||||||| ||
Sbjct 1947 TCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCC 2006
Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306
|| ||||| | ||| ||| || || ||| ||| | || || | || |||||
Sbjct 2007 GGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTT 2066
Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366
|| | || || || || | | || || ||||| ||||| ||||| || || | |
Sbjct 2067 CGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCA 2126
Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423
|| || | ||||| |||| |||||| | ||||| ||| || || || | |
Sbjct 2127 CCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGC 2186
Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483
|| || | ||| || | || | |||||| ||||| |||| | || |||| ||
Sbjct 2187 ATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 2246
Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGG 81540
| || ||| || ||||| || || || | || ||| || ||| ||||||
Sbjct 2247 ATTCTG-TGAATGTTGAGACCAATACCTCCAG--CATTTTTAGAGATCATAGCACATGTC 2303
Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600
|| | ||| |||||||| || || || || || | ||||| |||| | ||| || |
Sbjct 2304 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 2363
Query 81601 GACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658
|| | ||||| ||| | | | || || ||| ||||| |||| ||||| |||| |
Sbjct 2364 GAAAGCTGAG--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 2421
Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718
| ||| ||||| |||| ||||| || || ||| ||||||||||||||||||||
Sbjct 2422 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAATAC 2481
Query 81719 CGATAGCTACACGCATAAACAT 81740
| | || |||||||| | |||
Sbjct 2482 CAACGGCAACACGCATGATCAT 2503
>seq515
Length=18996
Score = 149 bits (164), Expect = 7e-31
Identities = 142/182 (78%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473
||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| ||
Sbjct 13714 CTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTAT 13773
Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533
|| ||| | ||| | || || |||||||||||||||||||| || ||||| || ||| |
Sbjct 13774 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTT 13833
Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593
|| || || || |||||||||||||| | || ||||| ||||||| || |||||||
Sbjct 13834 GATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATCCAAAA 13893
Query 27594 GG 27595
||
Sbjct 13894 GG 13895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570202504401200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |