Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6733 170 2e-37 SEQ14665 158 1e-33 SEQ14673 156 5e-33 seq515 149 7e-31 >seq6733 Length=2883 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || || || || || || |||||||| || | Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||| | || || ||||||||||||||||| || || || ||| Sbjct 1740 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 1681 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||||||||| |||| || ||||| | ||||| || Sbjct 1680 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 1621 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||||||||||||||| | ||| | ||||| || ||||| Sbjct 1620 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGTCTACGTGGTGG 1574 >SEQ14665 Length=6019 Score = 158 bits (174), Expect = 1e-33 Identities = 166/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||| ||||| ||||| || | ||| | Sbjct 2309 GTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCGAC 2368 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || |||||||||||||| |||||||| || || || ||| | || Sbjct 2369 AATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTGATC 2428 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGA 27596 || |||||||| |||||||| |||| ||| ||||| ||| ||||| || ||||||| || Sbjct 2429 TTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGC-GACTACAACATCCAAAAAGA 2487 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||| ||||| | || | || ||||| ||||| Sbjct 2488 ATCCACCCTTCACTTGGTGCTCCGCCTTCGTGGTGG 2523 Score = 136 bits (150), Expect = 5e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || || || ||||| ||||| | |||| || | || | ||| Sbjct 2037 ACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGAGC 2096 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| |||||||||||||| || ||||| ||||| | || || || || || Sbjct 2097 AAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAA 2156 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||| || |||| |||||| | ||| |||||||| | |||||||| || ||||| || Sbjct 2157 CAACTTGAAGATGGCCGTACCTTGAGC-GACTATAACATTCAAAAGGAGTCTACTCTCCA 2215 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||| | |||||||| || || Sbjct 2216 TCTCGTCCTCCGTCTTCGTGGCGG 2239 Score = 127 bits (140), Expect = 2e-24 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| || |||||||| || || || |||||||| ||||| || ||||||||||||||| Sbjct 2541 ATTCAAGATAAGGAGGGTATCCCACCGGACCAGCAACGTCTTATCTTTGCTGGTAAGCAA 2600 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| ||| || ||| ||||||| || |||| || || ||||| || ||| | Sbjct 2601 CTTGAGGATGGTCGCACTCTATCAGACTACAACATCCAGAAAGAGTCCACACTGCATTTG 2660 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 ||| | ||||| || ||||| Sbjct 2661 GTCCTTCGTCTCCGTGGTGG 2680 Score = 120 bits (132), Expect = 3e-22 Identities = 183/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||| ||||| ||||| | || || || || Sbjct 2682 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATTACATTGGAAGTGGAATCGTCA 2741 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||| | || ||||| ||||||||||| || || || ||||| Sbjct 2742 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 2801 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || |||||||| ||||| | ||||||| | || || | || || || Sbjct 2802 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 2861 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 | || ||||| |||| | || | || | |||||||| || || ||| || | | Sbjct 2862 ATTCAGAAGGAGAGCACTTTGCACTTGGTGCTTCGTCTTCGTGGCGGTCAA---TAGATT 2918 Query 27646 -TTTTC--CTGCACATAT 27660 ||||| |||||||||| Sbjct 2919 CTTTTCTTCTGCACATAT 2936 >SEQ14673 Length=3941 Score = 156 bits (172), Expect = 5e-33 Identities = 521/802 (65%), Gaps = 19/802 (2%) Strand=Plus/Plus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||| ||||| ||||||||||| || ||| || || ||||| || ||||| | Sbjct 1710 TCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTACTC 1769 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || ||||| || |||||||| |||| | || | ||||||||| || | || | Sbjct 1770 TTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCGGTTTGAGCCTCG 1829 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 || |||| || ||||| || | || |||| |||||| | | ||||| | || Sbjct 1830 AGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCTCA 1889 Query 81130 TACTTGGCGTA---AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCAC 81186 || | | || |||||| |||| | | || | | |||| | | || || Sbjct 1890 TAACTCTCATAGAGAGCTTCA---AACTCGTCGCCATATACATCAGCCAACCCAGGACAT 1946 Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246 || || |||||||| || ||| || | || || || ||| ||||||||| || Sbjct 1947 TCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATCC 2006 Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 || ||||| | ||| ||| || || ||| ||| | || || | || ||||| Sbjct 2007 GGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCATGGTTCTTT 2066 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | || || || || | | || || ||||| ||||| ||||| || || | | Sbjct 2067 CGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATGCA 2126 Query 81367 CCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAAC 81423 || || | ||||| |||| |||||| | ||||| ||| || || || | | Sbjct 2127 CCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTGTTGAAAACTCGTAGC 2186 Query 81424 ATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGC 81483 || || | ||| || | || | |||||| ||||| |||| | || |||| || Sbjct 2187 ATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCACGG 2246 Query 81484 ACCTTGCTGATTGAA-AGACCGATGCCACCTGACCACTTT--GAAATCTGAGCACACCGG 81540 | || ||| || ||||| || || || | || ||| || ||| |||||| Sbjct 2247 ATTCTG-TGAATGTTGAGACCAATACCTCCAG--CATTTTTAGAGATCATAGCACATGTC 2303 Query 81541 TTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTT 81600 || | ||| |||||||| || || || || || | ||||| |||| | ||| || | Sbjct 2304 TTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAATGAGGAAGCATGAT 2363 Query 81601 GACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658 || | ||||| ||| | | | || || ||| ||||| |||| ||||| |||| | Sbjct 2364 GAAAGCTGAG--CTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 2421 Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATAC 81718 | ||| ||||| |||| ||||| || || ||| |||||||||||||||||||| Sbjct 2422 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATCGTCACCGTGAATAC 2481 Query 81719 CGATAGCTACACGCATAAACAT 81740 | | || |||||||| | ||| Sbjct 2482 CAACGGCAACACGCATGATCAT 2503 >seq515 Length=18996 Score = 149 bits (164), Expect = 7e-31 Identities = 142/182 (78%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| ||||| || ||||| || || |||||||| ||||| ||||| || Sbjct 13714 CTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGATACTAT 13773 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 || ||| | ||| | || || |||||||||||||||||||| || ||||| || ||| | Sbjct 13774 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACAACGTTT 13833 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||| | || ||||| ||||||| || ||||||| Sbjct 13834 GATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACATCCAAAA 13893 Query 27594 GG 27595 || Sbjct 13894 GG 13895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570202504401200