Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 197 3e-45
SEQ14665 167 5e-36
seq515 143 6e-29
seq359 96.9 8e-15
SEQ14673 95.1 3e-14
>seq6733
Length=2883
Score = 197 bits (218), Expect = 3e-45
Identities = 171/212 (81%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | |||||||||||| || ||||||||||| || || | |||||| | |||||||
Sbjct 1589 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 1648
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || |||||||| |||||||| || ||||| || ||||| || | ||| |||||||||
Sbjct 1649 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 1708
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || |||||||| |||||| |||||||||||| ||||| ||
Sbjct 1709 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 1768
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || || || || | ||||||
Sbjct 1769 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1800
>SEQ14665
Length=6019
Score = 167 bits (184), Expect = 5e-36
Identities = 163/210 (78%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || | |||||| ||||| |||||||||||||| || || |||||
Sbjct 2518 ACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGT 2459
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || || || || |||||||| | |||||||| || ||||||| ||
Sbjct 2458 GCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCC 2399
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || || || ||||||||||| || || ||||||||
Sbjct 2398 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAG 2339
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
|||||| ||||| || ||||||||||| ||
Sbjct 2338 AGTGATGGTCTTGCCAGTGAGAGTCTTGAC 2309
Score = 143 bits (158), Expect = 6e-29
Identities = 154/201 (77%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951
|||||| | ||||| || || ||||| ||||| ||||| |||||||| || | |||||
Sbjct 2234 ACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGG- 2176
Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011
| | |||||||| || || |||||||||||||| | ||| |||||||| || |||| ||
Sbjct 2175 TACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTC 2116
Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
| ||||| ||||| ||||| || ||||| ||||| || || | || |||||||
Sbjct 2115 CCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATAGTATCGCTGGACTCGACCTCGA 2056
Query 211072 GAGTGATCGTCTTTCCCGTGA 211092
| ||||| ||||| || ||||
Sbjct 2055 GGGTGATGGTCTTGCCGGTGA 2035
>seq515
Length=18996
Score = 143 bits (158), Expect = 6e-29
Identities = 139/179 (78%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| || || | |||||| | ||| || || || ||||| || ||||||||
Sbjct 13893 TTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 13834
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| ||||||||||| || |||| ||| ||||||||||||||||| || || || ||
Sbjct 13833 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 13774
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| || |||||| || ||||| || ||||| ||||||||||| || ||||| || ||
Sbjct 13773 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 13715
>seq359
Length=30495
Score = 96.9 bits (106), Expect = 8e-15
Identities = 128/175 (73%), Gaps = 6/175 (3%)
Strand=Plus/Plus
Query 139810 CCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAA 139869
|| ||||||||||| | || || |||||||| ||||||||| | | ||||| |||||
Sbjct 1814 CCCAAGAAGCACGGTCGTGGTGGTCAATCTGCATTGCGTTTTGCACGTCTTCGTGAGGAA 1873
Query 139870 AAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCA---AA 139926
||| | ||||||||| | | || ||||| ||| || | ||| ||| |||| |
Sbjct 1874 AAGCGCCACAACTACGTCCGTAAGGTTGCCGAGCTGGCTGTTCAGAATTTCATCACCGCA 1933
Query 139927 GACAACAAGTGTTTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGA 139981
|||| |||| ||| |||||||| ||||||| |||||||| || || ||||
Sbjct 1934 GACA--AAGT-CAATGTAGCTGGTATTATTTTGGCTGGTTCCGCCGATTTTAAGA 1985
>SEQ14673
Length=3941
Score = 95.1 bits (104), Expect = 3e-14
Identities = 191/280 (68%), Gaps = 10/280 (4%)
Strand=Plus/Plus
Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATG---GCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||||||||| ||||| | | || ||||| ||||| ||||| || ||||
Sbjct 1754 GTTCTTTTGGTTACTCTTCTT---ATTGCATGCATCCTTGTAAAGCATGAATGGATTTCC 1810
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||| | ||||||| |||||||| | |||||||| |||||| || |||||
Sbjct 1811 GGTCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 1870
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
|| | ||||| ||||| || | | ||||| | || || || ||||| |||||
Sbjct 1871 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 1930
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTT--CACT 178327
| | | || ||| ||||||||||| | || |||| | ||| ||| || ||
Sbjct 1931 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAAT--CCGCGTTCTTTTCAACA 1988
Query 178328 CGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367
|| ||||||||||| || | |||| | |||||||||||
Sbjct 1989 CGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAA 2028
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158927220504275
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |