Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6733 120 2e-22 SEQ14665 98.7 7e-16 >seq6733 Length=2883 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| | Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || || ||||| || || | || || ||||| Sbjct 1740 GATACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 1682 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || |||||||| ||||| ||||| | |||||| | ||| ||||| Sbjct 1681 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 1622 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 1621 CATCCAAAAGGAATCCAC 1604 >SEQ14665 Length=6019 Score = 98.7 bits (108), Expect = 7e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680 |||| || || ||||| || || || ||||||||||| || || || | ||||| | | Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366 Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739 | ||| | || | || || ||||| || || | || || |||||||| ||||| Sbjct 2367 ACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTG 2425 Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799 || || || || |||||||| ||||| | ||||| | |||| |||||||| |||||| Sbjct 2426 ATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAA 2485 Query 23800 GAGTCCAC 23807 || ||||| Sbjct 2486 GAATCCAC 2493 Score = 82.4 bits (90), Expect = 5e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAAC 23692 |||| || || || ||||| ||||| || || |||| || ||| | || | |||| Sbjct 2035 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGA 2094 Query 23693 AAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCA 23752 || ||| || || || || | || || || |||||||| || || || || |||| Sbjct 2095 GCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 2154 Query 23753 AACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||||||| ||||| | || || || |||| || ||||| ||||| ||||| || Sbjct 2155 AACAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTAC 2209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337947251488580