Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 120 2e-22
SEQ14665 98.7 7e-16
>seq6733
Length=2883
Score = 120 bits (132), Expect = 2e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| |||||||||||||| ||||| ||||| ||||| ||||| ||| |
Sbjct 1800 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 1741
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || || ||||| || || | || || |||||
Sbjct 1740 GATACCATCGACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 1682
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| ||| | || || |||||||| ||||| ||||| | |||||| | ||| |||||
Sbjct 1681 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 1622
Query 23790 CATACAAAAAGAGTCCAC 23807
||| ||||| || |||||
Sbjct 1621 CATCCAAAAGGAATCCAC 1604
>SEQ14665
Length=6019
Score = 98.7 bits (108), Expect = 7e-16
Identities = 136/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 23621 TCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTG 23680
|||| || || ||||| || || || ||||||||||| || || || | ||||| | |
Sbjct 2307 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTCGAGGTCGAGTCGTCCGACACCATCG 2366
Query 23681 A-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTA 23739
| ||| | || | || || ||||| || || | || || |||||||| |||||
Sbjct 2367 ACAATGTCAAGTC-CAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAACAACGTTTG 2425
Query 23740 ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAA 23799
|| || || || |||||||| ||||| | ||||| | |||| |||||||| ||||||
Sbjct 2426 ATCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAA 2485
Query 23800 GAGTCCAC 23807
|| |||||
Sbjct 2486 GAATCCAC 2493
Score = 82.4 bits (90), Expect = 5e-11
Identities = 123/175 (70%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 23633 TCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAAC 23692
|||| || || || ||||| ||||| || || |||| || ||| | || | ||||
Sbjct 2035 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACTATCGACAACGTAAAGA 2094
Query 23693 AAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCA 23752
|| ||| || || || || | || || || |||||||| || || || || ||||
Sbjct 2095 GCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCA 2154
Query 23753 AACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807
||||||| ||||| | || || || |||| || ||||| ||||| ||||| ||
Sbjct 2155 AACAACTTGAAGATGGCCGTACCTTGAGCGACTATAACATTCAAAAGGAGTCTAC 2209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337947251488580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |