Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 298 8e-76 >SEQ14673 Length=3941 Score = 298 bits (330), Expect = 8e-76 Identities = 1157/1792 (65%), Gaps = 42/1792 (2%) Strand=Plus/Plus Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828 ||||| ||| | || |||||||| || | ||||||| | ||||| || |||||||| Sbjct 743 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 802 Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888 || || || ||||||| |||| || |||||||||| || | ||| | Sbjct 803 TCCGGTCTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGT 862 Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948 || || || ||||| ||||| || || || || | || || || | ||||| Sbjct 863 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGC 922 Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 923 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 982 Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065 ||| |||||| ||| | | |||||||| |||||||| || | || || ||||| Sbjct 983 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTT 1042 Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125 || | || ||| ||| | | || | | | | || || || ||||| | Sbjct 1043 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 1102 Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185 ||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | | Sbjct 1103 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 1162 Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245 || ||| || | |||||||| || || ||||||||||| || || | ||||| Sbjct 1163 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 1222 Query 77246 ATTTCTGAGACCATGTGTTCTGATT-TTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304 || | || ||| ||| | ||||| | |||| || || | ||| |||||||| || | Sbjct 1223 GTTGCGGACACCGTGTTGTTTGATTGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 1281 Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363 |||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 1282 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 1340 Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419 || || |||| |||| || || || ||| | || |||| || | ||| || | Sbjct 1341 TAAGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 1396 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478 || ||||| |||||||| || | | ||||| | |||| |||||| ||||| | Sbjct 1397 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 1455 Query 77479 GATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 | |||| || || || ||| ||||| || | || ||||| || | | | ||||||| Sbjct 1456 G-TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCG 1513 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 ||| | |||| || | || ||||| | || || || || ||||| || || || Sbjct 1514 ATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTT 1573 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | ||||| ||||| |||| | || || | || || | ||||| | |||| Sbjct 1574 GTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC 1633 Query 77657 ATCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTC 77710 || | | || | ||||| | ||| || || || | ||||| || || || Sbjct 1634 CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTC 1693 Query 77711 ATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAG 77770 || | | | |||| | || || || || | ||| | || ||||| || Sbjct 1694 ATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 1753 Query 77771 ATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGT 77830 || | |||||| ||||| |||||||||| ||||| ||||| || || ||| | ||||| Sbjct 1754 GTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 1813 Query 77831 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA 77890 || | || | |||| ||| || | ||| | | |||| | || | ||| Sbjct 1814 CTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG-- 1868 Query 77891 TCG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC 77944 || ||||| ||| ||||| ||| || |||||| || || || | || Sbjct 1869 -CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATAC 1927 Query 77945 ATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAAC 78004 |||| |||| ||||| |||||||| |||||||| | || ||| || | | | | ||| Sbjct 1928 ATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAAC 1987 Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064 || ||||| |||||||| || ||||| | ||| || ||||| |||| | ||| Sbjct 1988 ACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTC 2047 Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124 ||| || || |||||| || || || ||||| | || ||| | ||||| || || Sbjct 2048 TTCCTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTC 2107 Query 78125 TAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGT 78184 ||||| | ||| | | ||||| || || || || || || || | ||||| || || Sbjct 2108 AAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGT 2167 Query 78185 GTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAAT 78244 ||| || |||||| | ||| || | || ||||| || | || || || || | || Sbjct 2168 GTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGAT 2227 Query 78245 ATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGA 78304 || ||| | || || || | |||| | || || ||||| || | ||||| Sbjct 2228 GTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGA 2287 Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTT 78364 || | ||| || || | ||||| || ||||| || |||||||| ||| |||| | Sbjct 2288 GATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATC 2347 Query 78365 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGA 78424 || || || || || | ||| || || || || || | ||| || || Sbjct 2348 AATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGA 2407 Query 78425 TGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484 || || || || |||| | || | || ||||| || ||||| || || || || Sbjct 2408 GGCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATC 2467 Query 78485 -CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || | ||||| || || || |||||||| | ||| || || || | ||| Sbjct 2468 GTCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694537377346400