Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 298 8e-76
>SEQ14673
Length=3941
Score = 298 bits (330), Expect = 8e-76
Identities = 1157/1792 (65%), Gaps = 42/1792 (2%)
Strand=Plus/Plus
Query 76770 TTCTT-ATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACAT 76828
||||| ||| | || |||||||| || | ||||||| | ||||| || ||||||||
Sbjct 743 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 802
Query 76829 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACT 76888
|| || || ||||||| |||| || |||||||||| || | ||| |
Sbjct 803 TCCGGTCTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGT 862
Query 76889 AGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 76948
|| || || ||||| ||||| || || || || | || || || | |||||
Sbjct 863 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGC 922
Query 76949 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 77008
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 923 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 982
Query 77009 ATCATCTGGAAGGTTTGTA---TTTTGAATGGAACCACCATCTGATATAATTGTATTCTT 77065
||| |||||| ||| | | |||||||| |||||||| || | || || |||||
Sbjct 983 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTT 1042
Query 77066 TATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTAT 77125
|| | || ||| ||| | | || | | | | || || || ||||| |
Sbjct 1043 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 1102
Query 77126 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGA 77185
||| |||||||||| ||| || | ||||| ||| || ||| || |||||||| | |
Sbjct 1103 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 1162
Query 77186 TTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACT 77245
|| ||| || | |||||||| || || ||||||||||| || || | |||||
Sbjct 1163 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 1222
Query 77246 ATTTCTGAGACCATGTGTTCTGATT-TTATCTTTTAGATATTTCCAATCCCAAAGATCTG 77304
|| | || ||| ||| | ||||| | |||| || || | ||| |||||||| || |
Sbjct 1223 GTTGCGGACACCGTGTTGTTTGATTGATTTCTTCAAGCTA-TCCCAGTCCCAAAGGTCGG 1281
Query 77305 AAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG-CATATGATCCATTA 77363
|||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 1282 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 1340
Query 77364 TATGTTTCATAAGGT--CCTTCTGTTTCAGCTAGTTCACAAC--TCGCTTCCAATGCTCC 77419
|| || |||| |||| || || || ||| | || |||| || | ||| || |
Sbjct 1341 TAAGTCTCAT-AGGTACCCAACTCCTT-AGCAA--TCTCAACGGACGATGTCAAAGCAGC 1396
Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCAATACTATCAAACG 77478
|| ||||| |||||||| || | | ||||| | |||| |||||| ||||| |
Sbjct 1397 GTGGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATG 1455
Query 77479 GATAATGTAAAAG--AATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536
| |||| || || || ||| ||||| || | || ||||| || | | | |||||||
Sbjct 1456 G-TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCG 1513
Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596
||| | |||| || | || ||||| | || || || || ||||| || || ||
Sbjct 1514 ATGACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTT 1573
Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656
|| | ||||| ||||| |||| | || || | || || | ||||| | ||||
Sbjct 1574 GTTCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC 1633
Query 77657 ATCTATAA----CAAACATGTT--CAAAGCTATAGATGCTAGATTACAAACTGCTACCTC 77710
|| | | || | ||||| | ||| || || || | ||||| || || ||
Sbjct 1634 CTCATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTC 1693
Query 77711 ATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAG 77770
|| | | | |||| | || || || || | ||| | || ||||| ||
Sbjct 1694 ATCTGGGGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAG 1753
Query 77771 ATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGT 77830
|| | |||||| ||||| |||||||||| ||||| ||||| || || ||| | |||||
Sbjct 1754 GTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGT 1813
Query 77831 TTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA 77890
|| | || | |||| ||| || | ||| | | |||| | || | |||
Sbjct 1814 CTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTT---TGATGGTCTTG-- 1868
Query 77891 TCG-CCTCTCTCTT-----TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAAC 77944
|| ||||| ||| ||||| ||| || |||||| || || || | ||
Sbjct 1869 -CGACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATAC 1927
Query 77945 ATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAAC 78004
|||| |||| ||||| |||||||| |||||||| | || ||| || | | | | |||
Sbjct 1928 ATCAGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAAC 1987
Query 78005 TCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTC 78064
|| ||||| |||||||| || ||||| | ||| || ||||| |||| | |||
Sbjct 1988 ACGCTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTC 2047
Query 78065 TTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTC 78124
||| || || |||||| || || || ||||| | || ||| | ||||| || ||
Sbjct 2048 TTCCTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTC 2107
Query 78125 TAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGT 78184
||||| | ||| | | ||||| || || || || || || || | ||||| || ||
Sbjct 2108 AAGATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGT 2167
Query 78185 GTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAAT 78244
||| || |||||| | ||| || | || ||||| || | || || || || | ||
Sbjct 2168 GTTGTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGAT 2227
Query 78245 ATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGA 78304
|| ||| | || || || | |||| | || || ||||| || | |||||
Sbjct 2228 GTATGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGA 2287
Query 78305 TATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTT 78364
|| | ||| || || | ||||| || ||||| || |||||||| ||| |||| |
Sbjct 2288 GATCATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATC 2347
Query 78365 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGA 78424
|| || || || || | ||| || || || || || | ||| || ||
Sbjct 2348 AATGAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGA 2407
Query 78425 TGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTC 78484
|| || || || |||| | || | || ||||| || ||||| || || || ||
Sbjct 2408 GGCGTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCAATATC 2467
Query 78485 -CCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535
|| | ||||| || || || |||||||| | ||| || || || | |||
Sbjct 2468 GTCACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTC 2518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694537377346400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |