Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value SEQ14673 307 2e-78 >SEQ14673 Length=3941 Score = 307 bits (340), Expect = 2e-78 Identities = 1162/1794 (65%), Gaps = 38/1794 (2%) Strand=Plus/Plus Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423 ||||| ||| | ||||||||||| || | |||||| | | ||||| || |||||||| Sbjct 743 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 802 Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483 || || || ||||||| |||| || |||||||||| || | ||| | Sbjct 803 TCCGGTCTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGT 862 Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543 || || || ||||| ||||| || || || || | || || || | ||||| Sbjct 863 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGC 922 Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603 ||||||| | ||| || ||||| ||| ||||| | || ||| ||| | ||||| Sbjct 923 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 982 Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660 ||| |||||| || | | |||||||| || || || |||| || || ||||| Sbjct 983 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTT 1042 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || | || ||| ||| | ||| | | | | || || || ||||||| Sbjct 1043 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 1102 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | | Sbjct 1103 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 1162 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 || ||| || | |||||||| || || || |||||||| || || | ||||| Sbjct 1163 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 1222 Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 || | || ||| ||| | ||||| | |||| || ||| ||| |||||||| || | Sbjct 1223 GTTGCGGACACCGTGTTGTTTGATTGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 1281 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958 ||| ||| |||| | ||||||||| || || || | || || ||| || | Sbjct 1282 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 1340 Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016 || || || || || || || | ||| | || |||| | | | || ||| ||| Sbjct 1341 TAAGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 1398 Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075 ||||| |||||||| || | | || || | |||| |||||| | ||||| || Sbjct 1399 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 1456 Query 76076 TAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133 |||| || || || ||| ||||| || || || ||||| || | | | ||||||| || Sbjct 1457 TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGAT 1515 Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193 | | |||| || || ||||| | ||||| || || || || || || || | Sbjct 1516 GACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 1575 Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253 | | ||||||||||| |||| | || || | || || | ||||| | |||| | Sbjct 1576 TCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCT 1635 Query 76254 CTATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 | ||| || | || || ||||| || || || | ||||| || || |||| Sbjct 1636 CATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCAT 1695 Query 76308 TAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364 | |||| |||| | || || ||||| | ||| | || || || | Sbjct 1696 CTGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGA 1752 Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424 | || | |||||| ||||| || || |||| ||||| ||||| | || ||| |||| | Sbjct 1753 GGTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGG 1812 Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT 76484 | || | || | |||| ||| || | ||| | | ||||| || | || Sbjct 1813 TCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCG 1870 Query 76485 ATCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATC 76542 | | || | || ||| || | | ||| | |||||| || || || | ||||| Sbjct 1871 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 1930 Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602 | |||| |||||||||||||| || ||||| | || ||| || | | | | ||| || Sbjct 1931 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 1990 Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||| |||||||| || ||||| | ||| || ||||| |||| | |||||| Sbjct 1991 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 2050 Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722 || || |||||| || || |||||||| | || ||| | ||||| || || || Sbjct 2051 CTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 2110 Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782 ||| | || | |||| || || || || || || || || | ||||| |||||||| Sbjct 2111 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 2170 Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 || |||||| | ||| || | |||||||| || |||| || || || | || || Sbjct 2171 GTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTA 2230 Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902 ||| ||||| || | ||| || || || ||||| || |||||||||| Sbjct 2231 TGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGAT 2290 Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962 | |||||| || | || ||||| || || || ||||| || ||| |||| | || Sbjct 2291 CATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAAT 2350 Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022 || || || || | ||| || || || || || | |||||| || || Sbjct 2351 GAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 2410 Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-C 77080 || ||||| |||| | || | || ||||| || ||||| | ||| || ||||| Sbjct 2411 GTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCAATATCGT 2469 Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134 || | ||||| || || || |||||||| | ||| || || || |||||| || Sbjct 2470 CACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCA 2522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712799521723200