Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
SEQ14673 307 2e-78
>SEQ14673
Length=3941
Score = 307 bits (340), Expect = 2e-78
Identities = 1162/1794 (65%), Gaps = 38/1794 (2%)
Strand=Plus/Plus
Query 75365 TTCTT-ATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACAT 75423
||||| ||| | ||||||||||| || | |||||| | | ||||| || ||||||||
Sbjct 743 TTCTTGATCGACGGTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACAT 802
Query 75424 ACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACT 75483
|| || || ||||||| |||| || |||||||||| || | ||| |
Sbjct 803 TCCGGTCTTGAGACCCAATTTCCAACCAGCGAAATGCATGGAAGTAATCTTGCCCATTGT 862
Query 75484 CGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGC 75543
|| || || ||||| ||||| || || || || | || || || | |||||
Sbjct 863 GGGGTCTTTCATGTGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGGTCAGC 922
Query 75544 CGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGAT 75603
||||||| | ||| || ||||| ||| ||||| | || ||| ||| | |||||
Sbjct 923 GGCCATTTGAACAATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGAT 982
Query 75604 ATCATCTGGAAGATTTGTA---TTTTGAATGGATCCGCCATCAGATATAATTGTATTCTT 75660
||| |||||| || | | |||||||| || || || |||| || || |||||
Sbjct 983 GTCAGCTGGAATGTTGGGAATGTTTTGAATAGAACCACCGTCAGCGATGATACGGTTCTT 1042
Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720
|| | || ||| ||| | ||| | | | | || || || |||||||
Sbjct 1043 CATGTTGTCTGACCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAAC 1102
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
||| |||||||||| ||| || | |||| ||| || ||| || |||||||| | |
Sbjct 1103 TTGGAATTCTCCAGCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCA 1162
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
|| ||| || | |||||||| || || || |||||||| || || | |||||
Sbjct 1163 CTCGTTGAAACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACT 1222
Query 75841 ATTTCTGAGACCATGTGTTCTGATTT-TATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899
|| | || ||| ||| | ||||| | |||| || ||| ||| |||||||| || |
Sbjct 1223 GTTGCGGACACCGTGTTGTTTGATTGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGG 1281
Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG-CATATGATCCATTA 75958
||| ||| |||| | ||||||||| || || || | || || ||| || |
Sbjct 1282 TAGGTGTAACTCCCCACATATCGTATTGAAGTTCGCCCTT-CGAGACAGGTGAGCCTTCG 1340
Query 75959 TATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCC-TCT-AACGCACCGT 76016
|| || || || || || || | ||| | || |||| | | | || ||| |||
Sbjct 1341 TAAGTCTCATAGGTACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGT 1398
Query 76017 AATAAATTGTTTCGAAAATCTTCTTATTAAGAT-CTTGCGCTTCAAGACTATCAAAAGGA 76075
||||| |||||||| || | | || || | |||| |||||| | ||||| ||
Sbjct 1399 GGTAAATAGTTTCGAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG- 1456
Query 76076 TAATGTAAAAG--AATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTAT 76133
|||| || || || ||| ||||| || || || ||||| || | | | ||||||| ||
Sbjct 1457 TAATCGAAGAGCCAAGAAA-GCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGAT 1515
Query 76134 GTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTAT 76193
| | |||| || || ||||| | ||||| || || || || || || || |
Sbjct 1516 GACGGAAATTGCTCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGT 1575
Query 76194 TGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCAT 76253
| | ||||||||||| |||| | || || | || || | ||||| | |||| |
Sbjct 1576 TCAAGTTTCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCT 1635
Query 76254 CTATCA----CAAACATATTA--AGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307
| ||| || | || || ||||| || || || | ||||| || || ||||
Sbjct 1636 CATTCATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCAT 1695
Query 76308 TAGCATTGGCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAA 76364
| |||| |||| | || || ||||| | ||| | || || || |
Sbjct 1696 CTGG---GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGA 1752
Query 76365 GATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAG 76424
| || | |||||| ||||| || || |||| ||||| ||||| | || ||| |||| |
Sbjct 1753 GGTTCTTTTGGTTACTCTTCTTATTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGG 1812
Query 76425 TTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGT 76484
| || | || | |||| ||| || | ||| | | ||||| || | ||
Sbjct 1813 TCTCGGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCG 1870
Query 76485 ATCGCTTCTCTCTTTCATATTG-TGT-ATATAACCGTTCAAATTCATCTCCCCAAACATC 76542
| | || | || ||| || | | ||| | |||||| || || || | |||||
Sbjct 1871 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 1930
Query 76543 ATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCG 76602
| |||| |||||||||||||| || ||||| | || ||| || | | | | ||| ||
Sbjct 1931 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 1990
Query 76603 TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662
||||| |||||||| || ||||| | ||| || ||||| |||| | ||||||
Sbjct 1991 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTC 2050
Query 76663 ATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAG 76722
|| || |||||| || || |||||||| | || ||| | ||||| || || ||
Sbjct 2051 CTTGCCATGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAG 2110
Query 76723 ATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTT 76782
||| | || | |||| || || || || || || || || | ||||| ||||||||
Sbjct 2111 ATAGACTGCAAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTT 2170
Query 76783 ATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842
|| |||||| | ||| || | |||||||| || |||| || || || | || ||
Sbjct 2171 GTTGAAAACTCGTAGCATGGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTA 2230
Query 76843 ACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGAT 76902
||| ||||| || | ||| || || || ||||| || ||||||||||
Sbjct 2231 TGCACCAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGAT 2290
Query 76903 TAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 76962
| |||||| || | || ||||| || || || ||||| || ||| |||| | ||
Sbjct 2291 CATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTGTCCTCCTTCATATCAAT 2350
Query 76963 AAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGC 77022
|| || || || | ||| || || || || || | |||||| || ||
Sbjct 2351 GAGGAAGCATGATGAAAGCTGAGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 2410
Query 77023 ATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT-TCTATATC-C 77080
|| ||||| |||| | || | || ||||| || ||||| | ||| || |||||
Sbjct 2411 GTGTGTGAAGTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGC-GCTCTCAATATCGT 2469
Query 77081 CATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACA 77134
|| | ||||| || || || |||||||| | ||| || || || |||||| ||
Sbjct 2470 CACCG-TGAATACCAACGGCAACACGCATGATCATTTGTTGTGGACGTTCTGCA 2522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712799521723200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |