Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 113 1e-19
SEQ14665 102 2e-16
>seq6733
Length=2883
Score = 113 bits (124), Expect = 1e-19
Identities = 152/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | |||||||| || || |||||||||||||| |||| | || | ||||||
Sbjct 1589 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 1648
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || ||||||||||| || | ||||| || | | |||||| ||||| ||
Sbjct 1649 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 1708
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| | || | | | || || || || || || || || |||
Sbjct 1709 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 1768
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| |||||||| || || ||||||| ||||||
Sbjct 1769 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1800
>SEQ14665
Length=6019
Score = 102 bits (112), Expect = 2e-16
Identities = 140/194 (72%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970
||| || || ||||||||||| | | |||||| ||||| || | ||||| || ||
Sbjct 2873 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 2816
Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030
||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| ||||||
Sbjct 2815 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 2756
Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090
| || | | | ||||| || ||||| | ||||| || || || || | ||||||
Sbjct 2755 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTG 2696
Query 152091 ACGAAGACCTGCAT 152104
||||||| ||||||
Sbjct 2695 ACGAAGATCTGCAT 2682
Score = 96.9 bits (106), Expect = 8e-15
Identities = 141/198 (71%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || || ||||||||||||||||| ||| | || | |||||||| |
Sbjct 2503 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 2445
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| ||| || |||||||| | | || || |||| | || || ||||| || || |
Sbjct 2444 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGA 2385
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| || ||| || || ||||| || || ||||
Sbjct 2384 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGC 2325
Query 152077 CCGTGAGAGTCTTCACGA 152094
| ||||||||||| ||||
Sbjct 2324 CAGTGAGAGTCTTGACGA 2307
Score = 89.7 bits (98), Expect = 1e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| ||||||||||| ||||| ||||| || ||| || || | |||||
Sbjct 2225 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGGTACGGCCATC 2166
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| ||
Sbjct 2165 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 2106
Query 152012 TTGAATTTT 152020
||||| ||
Sbjct 2105 CTGAATCTT 2097
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||| || || |||||||| ||||||||||| || | || ||| | |||||
Sbjct 2665 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGACCATCC 2606
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || |||||||| | |||||||||| | ||| || ||||| |||
Sbjct 2605 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 2546
Query 152013 TGAAT 152017
|||||
Sbjct 2545 TGAAT 2541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153597054315585
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |