Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08- 07] 15,135 sequences; 48,719,559 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6733 113 1e-19 SEQ14665 102 2e-16 >seq6733 Length=2883 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||||| || || |||||||||||||| |||| | || | |||||| Sbjct 1589 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 1648 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||| || | | |||||| ||||| || Sbjct 1649 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 1708 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | | || || || || || || || || ||| Sbjct 1709 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 1768 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || ||||||| |||||| Sbjct 1769 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 1800 >SEQ14665 Length=6019 Score = 102 bits (112), Expect = 2e-16 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 151913 CTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA--GGCTTTTCCCGGCG 151970 ||| || || ||||||||||| | | |||||| ||||| || | ||||| || || Sbjct 2873 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTT--CCAGCA 2816 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | | ||| ||||||| | ||| || ||||| |||||||| ||| |||||| Sbjct 2815 AAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACA 2756 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 | || | | | ||||| || ||||| | ||||| || || || || | |||||| Sbjct 2755 TTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCGGTCAAAGTCTTG 2696 Query 152091 ACGAAGACCTGCAT 152104 ||||||| |||||| Sbjct 2695 ACGAAGATCTGCAT 2682 Score = 96.9 bits (106), Expect = 8e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||||||||||||||| ||| | || | |||||||| | Sbjct 2503 CAAG-TGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGA 2445 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || |||||||| | | || || |||| | || || ||||| || || | Sbjct 2444 GTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTGGA 2385 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | | |||| || ||| || || ||||| || || |||| Sbjct 2384 TCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGC 2325 Query 152077 CCGTGAGAGTCTTCACGA 152094 | ||||||||||| |||| Sbjct 2324 CAGTGAGAGTCTTGACGA 2307 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| ||||||||||| ||||| ||||| || ||| || || | ||||| Sbjct 2225 GAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTATAGTCGCTCAAGGTACGGCCATC 2166 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || |||||||| | | ||| ||||||| | ||||| ||||| || Sbjct 2165 TTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATC 2106 Query 152012 TTGAATTTT 152020 ||||| || Sbjct 2105 CTGAATCTT 2097 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || |||||||| ||||||||||| || | || ||| | ||||| Sbjct 2665 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGACCATCC 2606 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || |||||||| | |||||||||| | ||| || ||||| ||| Sbjct 2605 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 2546 Query 152013 TGAAT 152017 ||||| Sbjct 2545 TGAAT 2541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153597054315585