Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F002242835.1_202017-08-
07] 15,135 sequences; 48,719,559 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq6733 131 1e-25
SEQ14665 118 8e-22
seq515 96.9 2e-15
>seq6733
Length=2883
Score = 131 bits (144), Expect = 1e-25
Identities = 158/213 (74%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| ||| ||||||||||||||||| |||| || ||| | || ||
Sbjct 1592 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 1651
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| ||||||| ||| |||||||| | || | || ||||| |||
Sbjct 1652 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 1711
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| ||| || ||| | ||||| || | |||||| ||||| | || || || |
Sbjct 1712 ATCTTGGACTTGACATTGT--CGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTT 1769
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339
| ||||||||||| || |||||||| |||||||
Sbjct 1770 TACCCGTGAGGGTTTTGACGAAGATCTGCATGA 1802
>SEQ14665
Length=6019
Score = 118 bits (130), Expect = 8e-22
Identities = 158/214 (74%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185
||||| ||| | ||||||||||| || ||||||||||| | ||||| || | ||
Sbjct 2891 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCT-GC-CATCC 2834
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|||| |||||| || ||||||||||| ||||| || || | || | ||| ||||| ||
Sbjct 2833 TCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 2774
Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303
||||| ||| || ||| | ||||| || | |||||||| |||| ||||| |
Sbjct 2773 TGAATCTTTGACTTGACATTGT--CAATGGTATCTGACGATTCCACTTCCAATGTAATGG 2716
Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| || | ||||| |||||||| |||||
Sbjct 2715 TCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 2682
Score = 102 bits (112), Expect = 6e-17
Identities = 145/202 (72%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| |||||| ||| || |||||||||||||| ||| || ||| | || ||
Sbjct 2506 CACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTC 2447
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| || || || || ||||||||||| || ||||| | ||| | || ||||| |||
Sbjct 2446 GAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATGCCCTCCTTGTCCTG 2387
Query 44248 TATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| || ||| | |||||||||| || || ||||| | || || |||
Sbjct 2386 GATCTTGGACTTGACATTGT--CGATGGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 2329
Query 44306 TTTCCCGTGAGGGTCTTCACGA 44327
|| || ||||| ||||| ||||
Sbjct 2328 TTGCCAGTGAGAGTCTTGACGA 2307
>seq515
Length=18996
Score = 96.9 bits (106), Expect = 2e-15
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207
|||||||||||||||| || | || || |||| || || ||||| ||||| ||||
Sbjct 13895 CCTTTTGGATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGA 13836
Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265
||||||| || || || | || | || ||||| ||| ||||| ||| || |||
Sbjct 13835 TCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 13776
Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325
| || || || | ||| || ||||| | || || ||||||||||| |||||||| ||
Sbjct 13775 --CAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGAC 13718
Query 44326 GAAG 44329
||||
Sbjct 13717 GAAG 13714
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359923996958295
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |